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Lj0g3v0236669.1

Overview

Field Value
Gene ID Lj0g3v0236669
Transcript ID Lj0g3v0236669.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description Myb-like protein A [Medicago truncatula] gi|357474921|ref|XP_003607746.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
76 124 49 – –
PANTHER
PTHR10641:SF473
106 426 321 1.70E-125 –
PANTHER
PTHR10641
106 426 321 1.70E-125 –
ProSiteProfiles
PS51294
130 181 52 17.17
IPR017930
SMART
SM00717
134 183 50 2.90E-14
IPR001005
Pfam
PF00249
135 180 46 9.00E-16
IPR001005
SUPERFAMILY
SSF46689
135 228 94 8.20E-28
IPR009057
Gene3D
G3DSA:1.10.10.60
136 188 53 1.70E-25
IPR009057
CDD
cd00167
138 179 42 3.20E-13 –
ProSiteProfiles
PS51294
182 236 55 26.703
IPR017930
SMART
SM00717
186 234 49 2.70E-14
IPR001005
Pfam
PF00249
187 229 43 2.50E-14
IPR001005
Gene3D
G3DSA:1.10.10.60
189 235 47 2.40E-20
IPR009057
CDD
cd00167
189 229 41 9.78E-12 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 23

Expression data

Expression pattern

Expression pattern of Lj0g3v0236669.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0236669.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.