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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0238669 |
| Transcript ID | Lj0g3v0238669.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Poly(A)-binding protein [Medicago truncatula] gi|357465579|ref|XP_003603074.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 16 | 101 | 86 | 8.10E-25 | ||
| SUPERFAMILY | 19 | 189 | 171 | 1.71E-47 | ||
| ProSiteProfiles | 20 | 98 | 79 | 17.796 | ||
| PANTHER | 20 | 136 | 117 | 1.20E-125 | – | |
| PANTHER | 20 | 136 | 117 | 1.20E-125 | – | |
| CDD | 21 | 100 | 80 | 1.53E-43 | – | |
| TIGRFAM | 21 | 359 | 339 | 1.20E-158 | ||
| SMART | 21 | 94 | 74 | 9.10E-20 | ||
| Pfam | 22 | 92 | 71 | 9.30E-18 | ||
| Gene3D | 102 | 199 | 98 | 1.50E-25 | ||
| CDD | 106 | 182 | 77 | 1.40E-40 | – | |
| ProSiteProfiles | 108 | 185 | 78 | 18.069 | ||
| SMART | 109 | 181 | 73 | 4.80E-23 | ||
| Pfam | 110 | 178 | 69 | 1.50E-19 | ||
| SMART | 113 | 181 | 69 | 0.93 | ||
| CDD | 199 | 278 | 80 | 6.10E-41 | – | |
| SUPERFAMILY | 200 | 359 | 160 | 2.31E-45 | ||
| ProSiteProfiles | 200 | 277 | 78 | 19.57 | ||
| Gene3D | 200 | 282 | 83 | 6.80E-30 | ||
| SMART | 201 | 273 | 73 | 1.50E-28 | ||
| SMART | 201 | 273 | 73 | 0.61 | ||
| Pfam | 202 | 270 | 69 | 5.20E-25 | ||
| Coils | 276 | 296 | 21 | – | – | |
| Gene3D | 294 | 357 | 64 | 1.40E-25 | ||
| PANTHER | 302 | 359 | 58 | 1.20E-125 | – | |
| PANTHER | 302 | 359 | 58 | 1.20E-125 | – | |
| ProSiteProfiles | 303 | 359 | 57 | 16.364 | ||
| SMART | 304 | 359 | 56 | 3.60E-07 | ||
| Pfam | 305 | 359 | 55 | 2.40E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of Lj0g3v0238669.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0238669.1, powered by CORGI.
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