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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006515
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 11 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.635s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0238669.1
n.a. Poly(A)-binding protein [Medicago truncatula] gi|357465579|ref|XP_003603074.1| chr0 123844430 123846188 -
2 domain predictions
1 GO term
Lj0g3v0342329.1
n.a. PREDICTED: polyadenylate-binding protein 2-like [Glycine max] gi|356564176|ref|XP_003550332.1| chr0 179458661 179463984 +
2 domain predictions
1 GO term
Lj1g3v4691700.1
n.a. PREDICTED: probable polyadenylate-binding protein At2g36660-like [Cicer arietinum] gi|502111603|ref|XP_004494108.1| chr1 55617640 55622373 +
2 domain predictions
1 GO term
Lj4g3v0620300.2
n.a. Poly(A)-binding protein [Medicago truncatula] gi|357475273|ref|XP_003607922.1| chr4 9566965 9578846 -
2 domain predictions
1 GO term
Lj4g3v0620300.3
n.a. PREDICTED: polyadenylate-binding protein 2-like [Glycine max] gi|356499763|ref|XP_003518706.1| chr4 9567798 9578846 -
2 domain predictions
1 GO term
Lj5g3v1889580.1
n.a. PREDICTED: polyadenylate-binding protein 3-like isoform X2 [Cicer arietinum] gi|502118843|ref|XP_004496416.1| chr5 26987440 26992253 +
2 domain predictions
1 GO term
LotjaGi1g1v0356800.1
n.a. Polyadenylate-binding protein; TAIR: AT4G34110.1 poly(A) binding protein 2; Swiss-Prot: sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2; TrEMBL-Plants: tr|M5XRJ2|M5XRJ2_PRUPE Polyadenylate-binding protein; Found in the gene: LotjaGi1g1v0356800 LjG1.1_chr1 82974898 82980761 -
2 domain predictions
1 GO term
LotjaGi1g1v0682900.1
n.a. Polyadenylate-binding protein; TAIR: AT2G36660.1 poly(A) binding protein 7; Swiss-Prot: sp|Q9ZQA8|PABP7_ARATH Polyadenylate-binding protein 7; TrEMBL-Plants: tr|G7L4Y5|G7L4Y5_MEDTR Polyadenylate-binding protein; Found in the gene: LotjaGi1g1v0682900 LjG1.1_chr1 125023357 125028204 -
2 domain predictions
1 GO term
LotjaGi4g1v0076900.1
n.a. Polyadenylate-binding protein; TAIR: AT1G49760.1 poly(A) binding protein 8; Swiss-Prot: sp|Q9FXA2|PABP8_ARATH Polyadenylate-binding protein 8; TrEMBL-Plants: tr|I1JE12|I1JE12_SOYBN Polyadenylate-binding protein; Found in the gene: LotjaGi4g1v0076900 LjG1.1_chr4 9851114 9863829 -
2 domain predictions
1 GO term
LotjaGi5g1v0027000.1
n.a. Polyadenylate-binding protein; TAIR: AT1G49760.1 poly(A) binding protein 8; Swiss-Prot: sp|Q9FXA2|PABP8_ARATH Polyadenylate-binding protein 8; TrEMBL-Plants: tr|A0A0B2PYJ0|A0A0B2PYJ0_GLYSO Polyadenylate-binding protein; Found in the gene: LotjaGi5g1v0027000 LjG1.1_chr5 4488157 4494026 +
2 domain predictions
1 GO term
LotjaGi5g1v0285400.1
n.a. Polyadenylate-binding protein; TAIR: AT1G71770.1 poly(A)-binding protein 5; Swiss-Prot: sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5; TrEMBL-Plants: tr|I1NH63|I1NH63_SOYBN Polyadenylate-binding protein; Found in the gene: LotjaGi5g1v0285400 LjG1.1_chr5 60179403 60183162 +
2 domain predictions
1 GO term