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Lj0g3v0246749.1

Overview

Field Value
Gene ID Lj0g3v0246749
Transcript ID Lj0g3v0246749.1
Lotus japonicus genome version MG20 v3.0
Description Dof-type zinc finger DNA-binding family protein [Theobroma cacao] gi|508699996|gb|EOX91892.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 41 41 – –
PANTHER
PTHR31992
22 173 152 1.00E-121 –
PANTHER
PTHR31992:SF34
22 173 152 1.00E-121 –
ProDom
PD007478
29 93 65 7.00E-27
IPR003851
Pfam
PF02701
37 93 57 4.60E-33
IPR003851
ProSiteProfiles
PS50884
39 93 55 29.432
IPR003851
ProSitePatterns
PS01361
41 77 37 –
IPR003851
MobiDBLite
mobidb-lite
84 111 28 – –
PANTHER
PTHR31992
195 342 148 1.00E-121 –
PANTHER
PTHR31992:SF34
195 342 148 1.00E-121 –
MobiDBLite
mobidb-lite
307 330 24 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj0g3v0246749.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0246749.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.