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Lj0g3v0255389.1

Overview

Field Value
Gene ID Lj0g3v0255389
Transcript ID Lj0g3v0255389.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: xylem serine proteinase 1-like [Cicer arietinum] gi|502157799|ref|XP_004510915.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10795
4 555 552 1.40E-242
IPR015500
PANTHER
PTHR10795:SF320
4 555 552 1.40E-242 –
Pfam
PF05922
9 55 47 5.40E-11
IPR010259
Gene3D
G3DSA:3.40.50.200
30 237 208 1.40E-68
IPR000209
CDD
cd04852
53 445 393 3.05E-107 –
SUPERFAMILY
SSF52743
54 276 223 5.11E-70
IPR000209
PRINTS
PR00723
76 95 20 6.90E-11
IPR015500
Pfam
PF00082
107 463 357 5.60E-43
IPR000209
PRINTS
PR00723
107 120 14 6.90E-11
IPR015500
CDD
cd02120
244 364 121 3.35E-17 –
Gene3D
G3DSA:3.40.50.200
355 476 122 1.40E-68
IPR000209
SUPERFAMILY
SSF52743
356 475 120 5.11E-70
IPR000209
PRINTS
PR00723
409 425 17 6.90E-11
IPR015500
ProSitePatterns
PS00138
410 420 11 –
IPR023828

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004252
Molecular function Serine-type endopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
Subterm of
GO:0006508
Biological process Proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
Subterm of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj0g3v0255389.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0255389.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.