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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR015500
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 184 results. Now displaying 1 of 4 with 50 rows per page. This search has taken 5.844s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0004409.1
n.a. PREDICTED: xylem serine proteinase 1-like [Cicer arietinum] gi|502157799|ref|XP_004510915.1| chr0 1613120 1616133 +
3 domain predictions
 –
Lj0g3v0057249.1
n.a. PREDICTED: xylem serine proteinase 1-like [Cicer arietinum] gi|502157799|ref|XP_004510915.1| chr0 18733948 18736961 -
3 domain predictions
 –
Lj0g3v0068789.1
n.a. n.a. chr0 24669069 24671282 +
2 domain predictions
 –
Lj0g3v0072829.1
n.a. Subtilisin-like protease [Medicago truncatula] gi|357462409|ref|XP_003601486.1| chr0 27130021 27142128 +
3 domain predictions
 –
Lj0g3v0091339.1
n.a. Subtilisin-like protease [Medicago truncatula] gi|357453673|ref|XP_003597117.1| chr0 37827665 37829782 +
3 domain predictions
 –
Lj0g3v0097469.1
n.a. Subtilisin-like protease [Medicago truncatula] gi|357453673|ref|XP_003597117.1| chr0 41211199 41212725 -
2 domain predictions
 –
Lj0g3v0097479.1
n.a. PREDICTED: subtilisin-like protease-like [Cicer arietinum] gi|502152770|ref|XP_004509085.1| chr0 41212817 41213302 -
2 domain predictions
 –
Lj0g3v0102749.1
n.a. Subtilisin-like serine protease [Medicago truncatula] gi|357514271|ref|XP_003627424.1| chr0 43728565 43729831 -
2 domain predictions
 –
Lj0g3v0106409.1
n.a. PREDICTED: cucumisin-like [Glycine max] gi|356551582|ref|XP_003544153.1| chr0 45756275 45757736 +
2 domain predictions
 –
Lj0g3v0110229.1
n.a. PREDICTED: subtilisin-like protease-like [Glycine max] gi|356554917|ref|XP_003545787.1| chr0 47808414 47809584 +
2 domain predictions
 –
Lj0g3v0131589.1
n.a. Subtilisin-like protease [Medicago truncatula] gi|357453673|ref|XP_003597117.1| chr0 59878588 59879397 +
2 domain predictions
 –
Lj0g3v0171039.1
n.a. PREDICTED: subtilisin-like protease-like [Glycine max] gi|356559732|ref|XP_003548151.1| chr0 81877511 81880268 -
3 domain predictions
 –
Lj0g3v0186329.1
n.a. PREDICTED: subtilisin-like protease-like [Cicer arietinum] gi|502152770|ref|XP_004509085.1| chr0 90756310 90759299 +
2 domain predictions
 –
Lj0g3v0190979.1
n.a. Tripeptidyl-peptidase [Medicago truncatula] gi|357443997|ref|XP_003592276.1| chr0 93369475 93383726 -
3 domain predictions
 –
Lj0g3v0194349.1
n.a. PREDICTED: cucumisin-like [Glycine max] gi|356499137|ref|XP_003518399.1| chr0 94823297 94826182 +
2 domain predictions
 –
Lj0g3v0201519.1
n.a. PREDICTED: subtilisin-like protease-like [Glycine max] gi|356541028|ref|XP_003538985.1| chr0 99633820 99634179 -
2 domain predictions
 –
Lj0g3v0207979.1
n.a. PREDICTED: subtilisin-like protease-like [Cicer arietinum] gi|502168000|ref|XP_004514295.1| chr0 104063311 104069241 +
2 domain predictions
 –
Lj0g3v0214489.1
n.a. PREDICTED: subtilisin-like protease-like [Cicer arietinum] gi|502176589|ref|XP_004515893.1| chr0 108687212 108691226 +
3 domain predictions
 –
Lj0g3v0221069.1
n.a. PREDICTED: cucumisin-like [Glycine max] gi|356499137|ref|XP_003518399.1| chr0 113351050 113351522 -
2 domain predictions
 –
Lj0g3v0241589.1
n.a. PREDICTED: subtilisin-like protease-like [Cicer arietinum] gi|502099703|ref|XP_004491541.1| chr0 125326389 125327674 -
2 domain predictions
 –
Lj0g3v0252159.1
n.a. Subtilisin-like protease [Medicago truncatula] gi|357477077|ref|XP_003608824.1| chr0 130739341 130739739 -
2 domain predictions
 –
Lj0g3v0252169.1
n.a. Subtilisin-like protease [Medicago truncatula] gi|357477077|ref|XP_003608824.1| chr0 130739846 130742009 -
2 domain predictions
 –
Lj0g3v0252179.1
n.a. PREDICTED: subtilisin-like protease-like [Cicer arietinum] gi|502176589|ref|XP_004515893.1| chr0 130742193 130743114 -
2 domain predictions
 –
Lj0g3v0253119.1
n.a. PREDICTED: cucumisin-like [Glycine max] gi|356551582|ref|XP_003544153.1| chr0 131420222 131423310 -
2 domain predictions
 –
Lj0g3v0253739.1
n.a. n.a. chr0 131668453 131671020 +
2 domain predictions
 –
Lj0g3v0253769.1
n.a. PREDICTED: cucumisin-like [Glycine max] gi|356553813|ref|XP_003545246.1| chr0 131672162 131672685 -
2 domain predictions
 –
Lj0g3v0255389.1
n.a. PREDICTED: xylem serine proteinase 1-like [Cicer arietinum] gi|502157799|ref|XP_004510915.1| chr0 132680509 132683522 +
3 domain predictions
 –
Lj0g3v0284549.1
n.a. PREDICTED: subtilisin-like protease-like [Cicer arietinum] gi|502106343|ref|XP_004492921.1| chr0 147640907 147648025 -
2 domain predictions
 –
Lj0g3v0284549.2
n.a. PREDICTED: subtilisin-like protease-like [Glycine max] gi|356529989|ref|XP_003533568.1| chr0 147640907 147651875 -
2 domain predictions
 –
Lj0g3v0284549.3
n.a. PREDICTED: subtilisin-like protease-like [Cicer arietinum] gi|502106325|ref|XP_004492916.1| chr0 147640907 147642514 -
2 domain predictions
 –
Lj0g3v0300309.1
n.a. PREDICTED: cucumisin-like [Glycine max] gi|356499137|ref|XP_003518399.1| chr0 156027636 156028695 +
2 domain predictions
 –
Lj0g3v0313839.1
n.a. PREDICTED: cucumisin-like [Glycine max] gi|356551582|ref|XP_003544153.1| chr0 163842472 163844624 +
2 domain predictions
 –
Lj0g3v0313849.1
n.a. PREDICTED: cucumisin-like [Glycine max] gi|356551582|ref|XP_003544153.1| chr0 163843553 163844774 +
2 domain predictions
 –
Lj0g3v0335989.1
n.a. Subtilisin-like protease [Medicago truncatula] gi|357507043|ref|XP_003623810.1| chr0 176023414 176025776 -
3 domain predictions
 –
Lj0g3v0339229.1
n.a. PREDICTED: subtilisin-like protease-like [Glycine max] gi|356500305|ref|XP_003518973.1| chr0 177684904 177692715 +
2 domain predictions
 –
Lj0g3v0340319.1
n.a. PREDICTED: cucumisin-like [Cicer arietinum] gi|502169063|ref|XP_004514528.1| chr0 178268971 178271549 -
3 domain predictions
 –
Lj0g3v0343309.1
n.a. PREDICTED: subtilisin-like protease-like isoform X1 [Cicer arietinum] gi|502140324|ref|XP_004504167.1| chr0 179972235 179975378 +
2 domain predictions
 –
Lj0g3v0345239.1
n.a. PREDICTED: cucumisin-like [Glycine max] gi|356553813|ref|XP_003545246.1| chr0 181111027 181112581 -
2 domain predictions
 –
Lj0g3v0345599.1
n.a. PREDICTED: subtilisin-like protease-like [Glycine max] gi|356509291|ref|XP_003523384.1| chr0 181290464 181291520 -
2 domain predictions
 –
Lj0g3v0354669.1
n.a. Subtilisin-like protease [Medicago truncatula] gi|357453673|ref|XP_003597117.1| chr0 186828692 186831535 +
2 domain predictions
 –
Lj0g3v0354679.1
n.a. Subtilisin-like protease [Medicago truncatula] gi|357453673|ref|XP_003597117.1| chr0 186832541 186834270 +
2 domain predictions
 –
Lj1g3v2215380.1
n.a. PREDICTED: subtilisin-like protease-like [Glycine max] gi|356509291|ref|XP_003523384.1| chr1 26360087 26363662 +
2 domain predictions
 –
Lj1g3v2608130.1
n.a. PREDICTED: xylem serine proteinase 1-like [Cicer arietinum] gi|502104881|ref|XP_004492669.1| chr1 30089689 30094881 +
3 domain predictions
 –
Lj1g3v2808050.1
n.a. PREDICTED: subtilisin-like protease-like [Glycine max] gi|356568457|ref|XP_003552427.1| chr1 31846981 31848217 +
2 domain predictions
 –
Lj1g3v2808060.1
n.a. PREDICTED: subtilisin-like protease-like [Glycine max] gi|356568457|ref|XP_003552427.1| chr1 31846981 31848834 +
2 domain predictions
 –
Lj1g3v2921640.1
n.a. PREDICTED: subtilisin-like protease-like [Cicer arietinum] gi|502106343|ref|XP_004492921.1| chr1 32804018 32822825 -
3 domain predictions
 –
Lj1g3v2921640.2
n.a. PREDICTED: subtilisin-like protease-like [Cicer arietinum] gi|502106343|ref|XP_004492921.1| chr1 32815712 32822825 -
3 domain predictions
 –
Lj1g3v4528380.1
n.a. Subtilisin-like protease [Medicago truncatula] gi|357510203|ref|XP_003625390.1| chr1 53301536 53304674 -
3 domain predictions
 –
Lj1g3v4667840.1
n.a. PREDICTED: subtilisin-like protease-like [Glycine max] gi|356535933|ref|XP_003536496.1| chr1 55305206 55308704 +
3 domain predictions
 –
Lj1g3v4667850.1
n.a. PREDICTED: subtilisin-like protease-like [Glycine max] gi|356535933|ref|XP_003536496.1| chr1 55305206 55307800 +
3 domain predictions
 –