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Lj0g3v0257769.2

Overview

Field Value
Gene ID Lj0g3v0257769
Transcript ID Lj0g3v0257769.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description Nascent polypeptide-associated complex subunit alpha [Medicago truncatula] gi|357464241|ref|XP_003602402.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 81 81 – –
PANTHER
PTHR21713
1 220 220 2.00E-122
IPR016641
ProSiteProfiles
PS51151
72 137 66 17.229
IPR002715
SMART
SM01407
75 131 57 1.40E-23
IPR002715
Pfam
PF01849
75 130 56 2.30E-22
IPR002715
MobiDBLite
mobidb-lite
156 182 27 – –
Gene3D
G3DSA:1.10.8.10
180 219 40 2.80E-22 –
CDD
cd14358
183 219 37 4.15E-17 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005854
Cellular component Nascent polypeptide-associated complex A heterodimeric protein complex that can reversibly bind to ribosomes, and is located in direct proximity to newly synthesized polypeptide chains as they emerge from the ribosome.
Subterm of

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj0g3v0257769.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0257769.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.