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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0261839 |
| Transcript ID | Lj0g3v0261839.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | U-box domain-containing protein [Medicago truncatula] gi|357456825|ref|XP_003598693.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 534 | 534 | 0 | – | |
| CDD | 1 | 108 | 108 | 4.77E-04 | – | |
| PANTHER | 1 | 534 | 534 | 0 | – | |
| Gene3D | 2 | 373 | 372 | 1.10E-41 | ||
| SMART | 27 | 67 | 41 | 230 | ||
| SUPERFAMILY | 41 | 372 | 332 | 1.13E-43 | ||
| SMART | 68 | 108 | 41 | 0.14 | ||
| CDD | 73 | 190 | 118 | 6.00E-05 | – | |
| ProSiteProfiles | 79 | 121 | 43 | 9.327 | ||
| SMART | 194 | 234 | 41 | 14 | ||
| SMART | 279 | 326 | 48 | 230 | ||
| CDD | 284 | 439 | 156 | 6.61E-04 | – | |
| SMART | 329 | 369 | 41 | 52 | ||
| SMART | 401 | 441 | 41 | 6.5 | ||
| CDD | 408 | 524 | 117 | 3.29E-04 | – | |
| Gene3D | 409 | 523 | 115 | 1.90E-11 | ||
| SUPERFAMILY | 413 | 488 | 76 | 1.13E-43 | ||
| SMART | 445 | 485 | 41 | 180 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0261839.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0261839.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.