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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0262169 |
| Transcript ID | Lj0g3v0262169.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat protein [Medicago truncatula] gi|357440191|ref|XP_003590373.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 18 | 524 | 507 | 0 | – | |
| PANTHER | 18 | 524 | 507 | 0 | – | |
| ProSiteProfiles | 93 | 127 | 35 | 7.432 | ||
| ProSiteProfiles | 128 | 158 | 31 | 6.763 | ||
| Gene3D | 159 | 208 | 50 | 7.90E-04 | ||
| ProSiteProfiles | 159 | 193 | 35 | 12.047 | ||
| Pfam | 159 | 202 | 44 | 1.80E-11 | ||
| TIGRFAM | 161 | 195 | 35 | 1.90E-06 | ||
| ProSiteProfiles | 221 | 251 | 31 | 6.84 | ||
| Pfam | 252 | 298 | 47 | 1.50E-07 | ||
| ProSiteProfiles | 252 | 286 | 35 | 10.665 | ||
| TIGRFAM | 254 | 285 | 32 | 1.20E-04 | ||
| Gene3D | 255 | 452 | 198 | 7.90E-04 | ||
| ProSiteProfiles | 287 | 321 | 35 | 6.763 | ||
| ProSiteProfiles | 322 | 352 | 31 | 7.476 | ||
| Pfam | 327 | 352 | 26 | 0.016 | ||
| ProSiteProfiles | 353 | 387 | 35 | 9.514 | ||
| TIGRFAM | 356 | 389 | 34 | 3.60E-06 | ||
| Pfam | 356 | 384 | 29 | 4.50E-06 | ||
| ProSiteProfiles | 389 | 423 | 35 | 6.873 | ||
| ProSiteProfiles | 426 | 460 | 35 | 7.454 | ||
| Pfam | 429 | 453 | 25 | 0.0039 | ||
| TIGRFAM | 430 | 453 | 24 | 0.002 | ||
| Pfam | 519 | 641 | 123 | 1.60E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj0g3v0262169.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0262169.1, powered by CORGI.
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