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Lj0g3v0264339.1

Overview

Field	Value
Gene ID	Lj0g3v0264339
Transcript ID	Lj0g3v0264339.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: pentatricopeptide repeat-containing protein At1g31430-like isoform X1 [Cicer arietinum] gi\|502163966\|ref\|XP_004513004.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR24015:SF311 View details on PTHR24015:SF311 Search for proteins/transripts with this domain View external data on PTHR24015:SF311	18	230	213	5.40E-96	–
PANTHER	PTHR24015 View details on PTHR24015 Search for proteins/transripts with this domain View external data on PTHR24015	18	230	213	5.40E-96	–
Pfam	PF13041 View details on PF13041 Search for proteins/transripts with this domain View external data on PF13041	65	111	47	3.10E-10	IPR002885 Show description in modal box View details on IPR002885 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51375 View details on PS51375 Search for proteins/transripts with this domain View external data on PS51375	66	100	35	11.674	IPR002885 Show description in modal box View details on IPR002885 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:1.25.40.10 View details on G3DSA:1.25.40.10 Search for proteins/transripts with this domain View external data on G3DSA:1.25.40.10	70	194	125	2.00E-05	IPR011990 Show description in modal box View details on IPR011990 Search for proteins/transripts with this domain View on EBI InterPro Service
TIGRFAM	TIGR00756 View details on TIGR00756 Search for proteins/transripts with this domain View external data on TIGR00756	70	98	29	7.40E-07	IPR002885 Show description in modal box View details on IPR002885 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51375 View details on PS51375 Search for proteins/transripts with this domain View external data on PS51375	101	135	35	6.478	IPR002885 Show description in modal box View details on IPR002885 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51375 View details on PS51375 Search for proteins/transripts with this domain View external data on PS51375	136	166	31	8.298	IPR002885 Show description in modal box View details on IPR002885 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF01535 View details on PF01535 Search for proteins/transripts with this domain View external data on PF01535	139	162	24	0.042	IPR002885 Show description in modal box View details on IPR002885 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF13041 View details on PF13041 Search for proteins/transripts with this domain View external data on PF13041	167	215	49	8.30E-09	IPR002885 Show description in modal box View details on IPR002885 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51375 View details on PS51375 Search for proteins/transripts with this domain View external data on PS51375	167	201	35	11.246	IPR002885 Show description in modal box View details on IPR002885 Search for proteins/transripts with this domain View on EBI InterPro Service
TIGRFAM	TIGR00756 View details on TIGR00756 Search for proteins/transripts with this domain View external data on TIGR00756	169	204	36	8.20E-10	IPR002885 Show description in modal box View details on IPR002885 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005515 View details of GO:0005515 AmiGO InterPro QuickGO	Molecular function	Protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).	Subterm of View details of GO:0005488

Genome browser

LORE1 insertions 19

Expression data

Expression pattern

Expression pattern of Lj0g3v0264339.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0264339.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.