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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0268139 |
| Transcript ID | Lj0g3v0268139.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like [Glycine max] gi|356569756|ref|XP_003553062.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 54 | 117 | 64 | 4.10E-230 | – | |
| PANTHER | 54 | 117 | 64 | 4.10E-230 | – | |
| ProSiteProfiles | 152 | 186 | 35 | 7.574 | ||
| Pfam | 155 | 184 | 30 | 0.1 | ||
| ProSiteProfiles | 188 | 222 | 35 | 7.848 | ||
| ProSiteProfiles | 223 | 257 | 35 | 6.16 | ||
| Gene3D | 228 | 313 | 86 | 5.20E-05 | ||
| ProSiteProfiles | 261 | 295 | 35 | 5.514 | ||
| ProSiteProfiles | 296 | 326 | 31 | 5.733 | ||
| PANTHER | 310 | 459 | 150 | 4.10E-230 | – | |
| PANTHER | 310 | 459 | 150 | 4.10E-230 | – | |
| ProSiteProfiles | 328 | 362 | 35 | 5.546 | ||
| ProSiteProfiles | 363 | 397 | 35 | 9.493 | ||
| Pfam | 365 | 393 | 29 | 0.041 | ||
| Pfam | 397 | 446 | 50 | 3.70E-15 | ||
| ProSiteProfiles | 398 | 432 | 35 | 12.134 | ||
| TIGRFAM | 400 | 434 | 35 | 2.60E-09 | ||
| ProSiteProfiles | 433 | 467 | 35 | 10.6 | ||
| TIGRFAM | 436 | 465 | 30 | 0.0021 | ||
| ProSiteProfiles | 533 | 567 | 35 | 6.259 | ||
| ProSiteProfiles | 568 | 603 | 36 | 5.075 | ||
| PANTHER | 596 | 680 | 85 | 4.10E-230 | – | |
| PANTHER | 596 | 680 | 85 | 4.10E-230 | – | |
| ProSiteProfiles | 604 | 638 | 35 | 9.734 | ||
| Pfam | 607 | 635 | 29 | 0.018 | ||
| ProSiteProfiles | 639 | 673 | 35 | 5.821 | ||
| ProSiteProfiles | 674 | 704 | 31 | 5.36 | ||
| ProSiteProfiles | 743 | 777 | 35 | 11.509 | ||
| Gene3D | 746 | 849 | 104 | 5.20E-05 | ||
| TIGRFAM | 747 | 775 | 29 | 6.90E-06 | ||
| Pfam | 747 | 774 | 28 | 1.00E-04 | ||
| ProSiteProfiles | 813 | 847 | 35 | 9.229 | ||
| TIGRFAM | 817 | 848 | 32 | 1.30E-06 | ||
| Pfam | 819 | 845 | 27 | 0.0053 | ||
| PANTHER | 820 | 868 | 49 | 4.10E-230 | – | |
| PANTHER | 820 | 868 | 49 | 4.10E-230 | – | |
| ProSiteProfiles | 848 | 882 | 35 | 6.456 | ||
| PANTHER | 917 | 947 | 31 | 4.10E-230 | – | |
| PANTHER | 917 | 947 | 31 | 4.10E-230 | – | |
| ProSiteProfiles | 918 | 952 | 35 | 6.873 | ||
| ProSiteProfiles | 953 | 987 | 35 | 7.574 | ||
| PANTHER | 983 | 1082 | 100 | 4.10E-230 | – | |
| PANTHER | 983 | 1082 | 100 | 4.10E-230 | – | |
| ProSiteProfiles | 988 | 1022 | 35 | 6.807 | ||
| ProSiteProfiles | 1023 | 1057 | 35 | 9.646 | ||
| TIGRFAM | 1027 | 1058 | 32 | 0.0011 | ||
| Pfam | 1028 | 1053 | 26 | 0.17 | ||
| ProSiteProfiles | 1058 | 1082 | 25 | 7.914 | ||
| Pfam | 1062 | 1081 | 20 | 0.28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0268139.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0268139.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.