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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0269529 |
| Transcript ID | Lj0g3v0269529.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|15228903|ref|NP_188314.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 61 | 61 | – | – | |
| SignalP | 1 | 10 | 10 | – | – | |
| PANTHER | 14 | 79 | 66 | 5.60E-254 | – | |
| PANTHER | 14 | 79 | 66 | 5.60E-254 | – | |
| PANTHER | 97 | 326 | 230 | 5.60E-254 | – | |
| PANTHER | 97 | 326 | 230 | 5.60E-254 | – | |
| ProSiteProfiles | 123 | 157 | 35 | 6.5 | ||
| ProSiteProfiles | 158 | 192 | 35 | 5.086 | ||
| ProSiteProfiles | 193 | 227 | 35 | 9.657 | ||
| TIGRFAM | 196 | 228 | 33 | 2.40E-06 | ||
| Pfam | 197 | 225 | 29 | 0.015 | ||
| Pfam | 227 | 276 | 50 | 1.20E-18 | ||
| ProSiteProfiles | 228 | 262 | 35 | 13.373 | ||
| TIGRFAM | 230 | 264 | 35 | 8.20E-10 | ||
| ProSiteProfiles | 263 | 297 | 35 | 12.945 | ||
| TIGRFAM | 265 | 299 | 35 | 1.60E-10 | ||
| ProSiteProfiles | 334 | 368 | 35 | 5.459 | ||
| PANTHER | 362 | 684 | 323 | 5.60E-254 | – | |
| PANTHER | 362 | 684 | 323 | 5.60E-254 | – | |
| ProSiteProfiles | 369 | 403 | 35 | 9.514 | ||
| TIGRFAM | 372 | 403 | 32 | 8.10E-04 | ||
| ProSiteProfiles | 404 | 438 | 35 | 6.939 | ||
| Pfam | 439 | 487 | 49 | 2.70E-16 | ||
| ProSiteProfiles | 439 | 473 | 35 | 12.836 | ||
| TIGRFAM | 441 | 474 | 34 | 8.40E-11 | ||
| ProSiteProfiles | 474 | 508 | 35 | 11.192 | ||
| TIGRFAM | 476 | 510 | 35 | 1.70E-05 | ||
| Pfam | 508 | 556 | 49 | 2.40E-15 | ||
| ProSiteProfiles | 509 | 543 | 35 | 12.847 | ||
| TIGRFAM | 511 | 545 | 35 | 1.50E-09 | ||
| Gene3D | 523 | 675 | 153 | 2.50E-07 | ||
| ProSiteProfiles | 544 | 578 | 35 | 11.893 | ||
| TIGRFAM | 547 | 579 | 33 | 5.60E-08 | ||
| ProSiteProfiles | 579 | 613 | 35 | 13.274 | ||
| Pfam | 580 | 625 | 46 | 2.90E-15 | ||
| TIGRFAM | 581 | 614 | 34 | 2.20E-09 | ||
| ProSiteProfiles | 614 | 648 | 35 | 12.606 | ||
| TIGRFAM | 616 | 650 | 35 | 3.90E-09 | ||
| ProSiteProfiles | 649 | 683 | 35 | 8.495 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0269529.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0269529.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.