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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0269859 |
| Transcript ID | Lj0g3v0269859.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|334185017|ref|NP_186807.2| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 211 | 206 | 0 | – | |
| PANTHER | 6 | 211 | 206 | 0 | – | |
| ProSiteProfiles | 43 | 73 | 31 | 6.84 | ||
| Pfam | 48 | 69 | 22 | 0.077 | ||
| Gene3D | 54 | 207 | 154 | 5.30E-06 | ||
| ProSiteProfiles | 74 | 109 | 36 | 8.331 | ||
| Pfam | 76 | 101 | 26 | 0.05 | ||
| ProSiteProfiles | 110 | 144 | 35 | 5.305 | ||
| ProSiteProfiles | 145 | 175 | 31 | 7.541 | ||
| Pfam | 175 | 223 | 49 | 1.10E-09 | ||
| ProSiteProfiles | 176 | 210 | 35 | 11.444 | ||
| TIGRFAM | 178 | 212 | 35 | 2.70E-05 | ||
| ProSiteProfiles | 211 | 245 | 35 | 6.555 | ||
| ProSiteProfiles | 246 | 276 | 31 | 6.325 | ||
| PANTHER | 247 | 557 | 311 | 0 | – | |
| PANTHER | 247 | 557 | 311 | 0 | – | |
| Pfam | 251 | 277 | 27 | 0.27 | ||
| ProSiteProfiles | 277 | 311 | 35 | 10.797 | ||
| TIGRFAM | 279 | 313 | 35 | 7.40E-05 | ||
| Pfam | 279 | 309 | 31 | 0.012 | ||
| ProSiteProfiles | 312 | 346 | 35 | 5.229 | ||
| ProSiteProfiles | 347 | 377 | 31 | 6.27 | ||
| Gene3D | 376 | 455 | 80 | 5.30E-06 | ||
| Pfam | 377 | 426 | 50 | 4.00E-09 | ||
| ProSiteProfiles | 378 | 413 | 36 | 9.24 | ||
| ProSiteProfiles | 414 | 444 | 31 | 8.32 | ||
| ProSiteProfiles | 450 | 480 | 31 | 7.783 | ||
| Pfam | 453 | 477 | 25 | 0.098 | ||
| Gene3D | 514 | 536 | 23 | 5.30E-06 | ||
| ProSiteProfiles | 516 | 550 | 35 | 5.492 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0269859.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0269859.1, powered by CORGI.
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