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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0278879 |
| Transcript ID | Lj0g3v0278879.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: phytoene synthase, chloroplastic-like [Cicer arietinum] gi|502135077|ref|XP_004502211.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 58 | 58 | 1.40E-149 | – | |
| Phobius | 1 | 206 | 206 | – | – | |
| PANTHER | 1 | 58 | 58 | 1.40E-149 | – | |
| PANTHER | 78 | 262 | 185 | 1.40E-149 | – | |
| PANTHER | 78 | 262 | 185 | 1.40E-149 | – | |
| Gene3D | 86 | 261 | 176 | 4.90E-76 | ||
| SUPERFAMILY | 90 | 261 | 172 | 4.60E-52 | ||
| CDD | 93 | 261 | 169 | 1.07E-60 | ||
| Pfam | 102 | 261 | 160 | 8.00E-41 | ||
| TMHMM | 207 | 229 | 23 | – | – | |
| Phobius | 207 | 228 | 22 | – | – | |
| ProSitePatterns | 210 | 225 | 16 | – | ||
| Phobius | 229 | 262 | 34 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Farnesyl-diphosphate farnesyltransferase activity | Catalysis of the reaction: 2 farnesyl diphosphate = diphosphate + presqualene diphosphate. | ||
| Biological process | Biosynthetic process | The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. | ||
| Molecular function | Transferase activity | Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. | ||
| Molecular function | Transferase activity, transferring alkyl or aryl (other than methyl) groups | Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor). | ||
| Molecular function | Squalene synthase activity | Catalysis of the reaction: presqualene diphosphate + NADPH = squalene + NADP+ + diphosphate. |
Expression pattern of Lj0g3v0278879.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0278879.2, powered by CORGI.
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