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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0279579 |
| Transcript ID | Lj0g3v0279579.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357444525|ref|XP_003592540.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 77 | 507 | 431 | 1.90E-284 | – | |
| PANTHER | 77 | 507 | 431 | 1.90E-284 | – | |
| ProSiteProfiles | 120 | 150 | 31 | 7.202 | ||
| ProSiteProfiles | 154 | 188 | 35 | 10.358 | ||
| Gene3D | 157 | 219 | 63 | 3.90E-07 | ||
| TIGRFAM | 161 | 188 | 28 | 2.90E-04 | ||
| Pfam | 164 | 186 | 23 | 0.0092 | ||
| SUPERFAMILY | 165 | 219 | 55 | 1.70E-05 | – | |
| ProSiteProfiles | 189 | 223 | 35 | 11.608 | ||
| Pfam | 193 | 234 | 42 | 1.30E-10 | ||
| TIGRFAM | 193 | 224 | 32 | 4.20E-07 | ||
| ProSiteProfiles | 224 | 258 | 35 | 8.133 | ||
| Gene3D | 256 | 338 | 83 | 3.90E-07 | ||
| SUPERFAMILY | 258 | 328 | 71 | 1.70E-05 | – | |
| Pfam | 258 | 305 | 48 | 9.30E-15 | ||
| ProSiteProfiles | 259 | 293 | 35 | 13.581 | ||
| TIGRFAM | 261 | 294 | 34 | 6.20E-10 | ||
| ProSiteProfiles | 294 | 328 | 35 | 10.928 | ||
| TIGRFAM | 297 | 328 | 32 | 4.90E-06 | ||
| ProSiteProfiles | 329 | 363 | 35 | 11.4 | ||
| Pfam | 329 | 376 | 48 | 1.50E-11 | ||
| TIGRFAM | 332 | 364 | 33 | 1.20E-05 | ||
| ProSiteProfiles | 364 | 399 | 36 | 8.955 | ||
| TIGRFAM | 367 | 401 | 35 | 5.60E-05 | ||
| ProSiteProfiles | 400 | 434 | 35 | 10.501 | ||
| Pfam | 402 | 432 | 31 | 0.13 | ||
| TIGRFAM | 403 | 434 | 32 | 0.0032 | ||
| Gene3D | 433 | 464 | 32 | 3.90E-07 | ||
| ProSiteProfiles | 435 | 469 | 35 | 10.041 | ||
| Pfam | 441 | 467 | 27 | 0.0031 | ||
| TIGRFAM | 442 | 469 | 28 | 1.40E-05 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0279579.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0279579.1, powered by CORGI.
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