Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj0g3v0281219.1

Overview

Field Value
Gene ID Lj0g3v0281219
Transcript ID Lj0g3v0281219.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like [Cicer arietinum] gi|502152794|ref|XP_004509097.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12001
16 142 127 2.50E-203 –
PANTHER
PTHR12001:SF47
16 142 127 2.50E-203 –
SUPERFAMILY
SSF48576
77 418 342 2.16E-80
IPR008949
Gene3D
G3DSA:1.10.600.10
78 419 342 4.90E-97
IPR008949
CDD
cd00685
101 417 317 7.65E-82 –
Pfam
PF00348
105 364 260 2.10E-69
IPR000092
SFLD
SFLDS00005
154 417 264 4.40E-30 –
PANTHER
PTHR12001:SF47
158 419 262 2.50E-203 –
PANTHER
PTHR12001
158 419 262 2.50E-203 –
ProSitePatterns
PS00723
175 189 15 –
IPR033749
ProSitePatterns
PS00444
297 309 13 –
IPR033749

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008299
Biological process Isoprenoid biosynthetic process The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
Subterm of

Genome browser

LORE1 insertions 15

Expression data

Expression pattern

Expression pattern of Lj0g3v0281219.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0281219.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.