Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj0g3v0284449.1

Overview

Field Value
Gene ID Lj0g3v0284449
Transcript ID Lj0g3v0284449.1
Lotus japonicus genome version MG20 v3.0
Description Ethylene responsive transcription factor 1a [Medicago truncatula] gi|357463809|ref|XP_003602186.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31194
1 362 362 5.50E-105
IPR017392
PANTHER
PTHR31194:SF16
1 362 362 5.50E-105 –
MobiDBLite
mobidb-lite
36 61 26 – –
MobiDBLite
mobidb-lite
80 113 34 – –
Gene3D
G3DSA:3.30.730.10
110 168 59 1.60E-29
IPR001471
SUPERFAMILY
SSF54171
111 168 58 3.47E-21
IPR016177
Pfam
PF00847
111 160 50 2.90E-12
IPR001471
CDD
cd00018
111 167 57 7.37E-33
IPR001471
SMART
SM00380
111 174 64 4.40E-38
IPR001471
ProSiteProfiles
PS51032
111 168 58 23.341
IPR001471
PRINTS
PR00367
112 123 12 8.40E-10
IPR001471
PRINTS
PR00367
134 150 17 8.40E-10
IPR001471
MobiDBLite
mobidb-lite
198 248 51 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj0g3v0284449.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0284449.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.