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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR017392
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 23 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.382s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0114779.1
n.a. CM0545.620.nc [Lotus japonicus] gi|164564747|dbj|BAF98227.1| chr0 50336772 50337256 +
2 domain predictions
1 GO term
Lj0g3v0150929.1
n.a. PREDICTED: ethylene-responsive transcription factor CRF4-like [Glycine max] gi|356560648|ref|XP_003548602.1| chr0 70308892 70310663 -
2 domain predictions
1 GO term
Lj0g3v0243159.1
n.a. PREDICTED: ethylene-responsive transcription factor WIN1-like [Glycine max] gi|356519349|ref|XP_003528335.1| chr0 126098851 126100401 +
2 domain predictions
1 GO term
Lj0g3v0253889.1
n.a. PREDICTED: ethylene-responsive transcription factor ERF003-like [Cicer arietinum] gi|502174548|ref|XP_004515544.1| chr0 131738530 131739597 -
2 domain predictions
1 GO term
Lj0g3v0284449.1
n.a. Ethylene responsive transcription factor 1a [Medicago truncatula] gi|357463809|ref|XP_003602186.1| chr0 147575660 147577647 -
2 domain predictions
1 GO term
Lj0g3v0293529.1
n.a. PREDICTED: ethylene-responsive transcription factor 4-like [Glycine max] gi|356522656|ref|XP_003529962.1| chr0 152354291 152356893 +
2 domain predictions
1 GO term
Lj1g3v1841220.1
n.a. PREDICTED: protein PPLZ02-like [Glycine max] gi|356507410|ref|XP_003522460.1| chr1 22375949 22377386 -
2 domain predictions
1 GO term
Lj1g3v1911720.1
n.a. PREDICTED: ethylene-responsive transcription factor SHINE 3-like [Glycine max] gi|356515442|ref|XP_003526409.1| chr1 22677192 22678898 +
2 domain predictions
1 GO term
Lj1g3v2623740.1
n.a. PREDICTED: ethylene-responsive transcription factor 4-like [Glycine max] gi|356522656|ref|XP_003529962.1| chr1 30375401 30376809 -
2 domain predictions
1 GO term
Lj1g3v3975310.1
n.a. transcription factor ERF [Medicago truncatula] gi|116831753|gb|ABK28850.1| chr1 46803645 46805698 -
2 domain predictions
1 GO term
Lj2g3v1068730.1
n.a. Ethylene-responsive transcription factor [Medicago truncatula] gi|357496535|ref|XP_003618556.1| chr2 17197142 17198566 +
2 domain predictions
1 GO term
Lj2g3v2087840.1
n.a. PREDICTED: ethylene-responsive transcription factor CRF2-like [Glycine max] gi|356540410|ref|XP_003538682.1| chr2 31379461 31381432 +
2 domain predictions
1 GO term
Lj2g3v2447140.1
n.a. PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like [Glycine max] gi|356500950|ref|XP_003519293.1| chr2 34548511 34550648 -
2 domain predictions
1 GO term
Lj3g3v0014470.1
n.a. PREDICTED: ethylene-responsive transcription factor ERF003-like [Cicer arietinum] gi|502174548|ref|XP_004515544.1| chr3 333676 334744 +
2 domain predictions
1 GO term
Lj3g3v2210420.1
n.a. PREDICTED: ethylene-responsive transcription factor WIN1-like [Glycine max] gi|356519349|ref|XP_003528335.1| chr3 27365560 27367963 -
2 domain predictions
1 GO term
Lj4g3v1770570.1
n.a. Ethylene-responsive transcription factor [Medicago truncatula] gi|357477723|ref|XP_003609147.1| chr4 25130987 25131925 +
2 domain predictions
1 GO term
Lj4g3v2604280.1
n.a. PREDICTED: ethylene-responsive transcription factor ERF015-like [Glycine max] gi|356525286|ref|XP_003531257.1| chr4 35166016 35167611 +
2 domain predictions
1 GO term
Lj4g3v3002550.1
n.a. PREDICTED: ethylene-responsive transcription factor CRF2-like [Cicer arietinum] gi|502139611|ref|XP_004503833.1| chr4 39704775 39705764 +
2 domain predictions
1 GO term
Lj6g3v1984370.1
n.a. PREDICTED: ethylene-responsive transcription factor ESR1-like [Cicer arietinum] gi|502078380|ref|XP_004485926.1| chr6 22942064 22943572 +
2 domain predictions
1 GO term
LotjaGi1g1v0105200.1
n.a. Ethylene-responsive transcription factor, putative; TAIR: AT4G27950.1 cytokinin response factor 4; Swiss-Prot: sp|O04682|PTI6_SOLLC Pathogenesis-related genes transcriptional activator PTI6; TrEMBL-Plants: tr|A0A0K2CTI3|A0A0K2CTI3_SOYBN AP2-EREBP transcription factor; Found in the gene: LotjaGi1g1v0105200 LjG1.1_chr1 16243419 16245873 +
2 domain predictions
1 GO term
LotjaGi1g1v0257900.1
n.a. Ethylene-responsive transcription factor; TAIR: AT1G21910.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q9SFE4|ERF12_ARATH Ethylene-responsive transcription factor ERF012; TrEMBL-Plants: tr|I3S908|I3S908_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0257900 LjG1.1_chr1 62425778 62427751 -
2 domain predictions
1 GO term
LotjaGi3g1v0009300.1
n.a. Ethylene-responsive transcription factor; TAIR: AT1G15360.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q9XI33|WIN1_ARATH Ethylene-responsive transcription factor WIN1; TrEMBL-Plants: tr|A0A151SH21|A0A151SH21_CAJCA Ethylene-responsive transcription factor WIN1; Found in the gene: LotjaGi3g1v0009300 LjG1.1_chr3 1061015 1062514 +
2 domain predictions
1 GO term
LotjaGi6g1v0044600.1
n.a. Ethylene-responsive transcription factor, putative; TAIR: AT4G27950.1 cytokinin response factor 4; Swiss-Prot: sp|O04682|PTI6_SOLLC Pathogenesis-related genes transcriptional activator PTI6; TrEMBL-Plants: tr|A0A0L9VDI0|A0A0L9VDI0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0044600 LjG1.1_chr6 8401581 8403118 -
2 domain predictions
1 GO term