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Lj0g3v0285999.1

Overview

Field Value
Gene ID Lj0g3v0285999
Transcript ID Lj0g3v0285999.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: endoglucanase-like [Glycine max] gi|356541382|ref|XP_003539156.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 11 11 – –
Phobius
TRANSMEMBRANE
12 36 25 – –
TMHMM
TMhelix
13 35 23 – –
PANTHER
PTHR31263
18 421 404 4.30E-229 –
PANTHER
PTHR31263:SF0
18 421 404 4.30E-229 –
Phobius
NON_CYTOPLASMIC_DOMAIN
37 551 515 – –
Gene3D
G3DSA:3.20.20.80
44 400 357 9.00E-69
IPR013781
SUPERFAMILY
SSF51445
44 397 354 3.92E-62
IPR017853
Pfam
PF00150
91 366 276 1.10E-25
IPR001547
SMART
SM00458
416 537 122 0.0032
IPR000772
SUPERFAMILY
SSF50370
416 543 128 1.25E-10
IPR000772
CDD
cd00161
418 543 126 0.00919914 –
Gene3D
G3DSA:2.80.10.50
419 526 108 2.90E-06 –
PANTHER
PTHR31263:SF0
467 549 83 4.30E-229 –
PANTHER
PTHR31263
467 549 83 4.30E-229 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004553
Molecular function Hydrolase activity, hydrolyzing O-glycosyl compounds Catalysis of the hydrolysis of any O-glycosyl bond.
Subterm of
GO:0005975
Biological process Carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
Subterm of

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj0g3v0285999.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0285999.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.