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Lj0g3v0286999.1

Overview

Field Value
Gene ID Lj0g3v0286999
Transcript ID Lj0g3v0286999.1
Lotus japonicus genome version MG20 v3.0
Description RAB7A [Lotus japonicus] gi|1370182|emb|CAA98168.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24073:SF586
1 205 205 1.40E-149 –
PANTHER
PTHR24073
1 205 205 1.40E-149 –
ProSiteProfiles
PS51419
4 205 202 32.816 –
SUPERFAMILY
SSF52540
5 181 177 2.56E-55
IPR027417
Gene3D
G3DSA:3.40.50.300
6 204 199 2.00E-66
IPR027417
SMART
SM00173
6 179 174 1.40E-25 –
TIGRFAM
TIGR00231
9 170 162 8.20E-26
IPR005225
SMART
SM00175
9 179 171 4.50E-92 –
PRINTS
PR00449
9 30 22 2.20E-39 –
CDD
cd01862
9 181 173 2.48E-125 –
Pfam
PF00071
10 176 167 6.50E-56
IPR001806
SMART
SM00174
11 179 169 4.20E-13 –
SMART
SM00176
14 205 192 5.40E-08 –
PRINTS
PR00449
32 48 17 2.20E-39 –
PRINTS
PR00449
50 72 23 2.20E-39 –
PRINTS
PR00449
116 129 14 2.20E-39 –
PRINTS
PR00449
154 176 23 2.20E-39 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

LORE1 insertions 71

Expression data

Expression pattern

Expression pattern of Lj0g3v0286999.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0286999.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.