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Lj0g3v0293379.1

Overview

Field Value
Gene ID Lj0g3v0293379
Transcript ID Lj0g3v0293379.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: AT-rich interactive domain-containing protein 1-like isoform X1 [Cicer arietinum] gi|502157133|ref|XP_004510770.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 25 25 – –
SMART
SM01014
21 110 90 3.60E-13 –
ProSiteProfiles
PS51011
24 114 91 17.631
IPR001606
SMART
SM00501
25 115 91 1.10E-12
IPR001606
SUPERFAMILY
SSF46774
28 117 90 1.28E-17
IPR001606
Pfam
PF01388
28 109 82 5.60E-11
IPR001606
Gene3D
G3DSA:1.10.150.60
29 114 86 5.40E-13
IPR001606
PANTHER
PTHR22970:SF23
169 564 396 5.90E-153 –
PANTHER
PTHR22970
169 564 396 5.90E-153 –
MobiDBLite
mobidb-lite
331 372 42 – –
SMART
SM01189
380 431 52 2.30E-04
IPR000949
MobiDBLite
mobidb-lite
538 585 48 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 21

Expression data

Expression pattern

Expression pattern of Lj0g3v0293379.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0293379.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.