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Lj0g3v0296779.1

Overview

Field Value
Gene ID Lj0g3v0296779
Transcript ID Lj0g3v0296779.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: myosin-Va-like [Glycine max] gi|356530241|ref|XP_003533691.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13140:SF256
1 318 318 3.00E-232 –
Pfam
PF00063
1 209 209 1.40E-56
IPR001609
ProSiteProfiles
PS51456
1 221 221 78.724
IPR001609
SMART
SM00242
1 222 222 2.90E-16
IPR001609
SUPERFAMILY
SSF52540
1 275 275 4.51E-78
IPR027417
PANTHER
PTHR13140
1 318 318 3.00E-232 –
SMART
SM00015
223 245 23 220
IPR000048
Pfam
PF00612
226 244 19 0.21
IPR000048
SMART
SM00015
246 268 23 30
IPR000048
ProSiteProfiles
PS50096
247 276 30 8.297
IPR000048
Pfam
PF00612
248 267 20 0.013
IPR000048
SMART
SM00015
271 293 23 0.02
IPR000048
ProSiteProfiles
PS50096
272 298 27 7.712
IPR000048
Pfam
PF00612
274 293 20 0.0036
IPR000048
SMART
SM00015
294 316 23 19
IPR000048
Pfam
PF00612
297 316 20 0.17
IPR000048
ProSiteProfiles
PS50096
297 318 22 7.693
IPR000048

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003774
Molecular function Motor activity Catalysis of the generation of force resulting either in movement along a microfilament or microtubule, or in torque resulting in membrane scission, coupled to the hydrolysis of a nucleoside triphosphate.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0016459
Cellular component Myosin complex A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes.
Subterm of
Part of

Genome browser

LORE1 insertions 16

Expression data

Expression pattern

Expression pattern of Lj0g3v0296779.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0296779.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.