Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj0g3v0298849.1

Overview

Field Value
Gene ID Lj0g3v0298849
Transcript ID Lj0g3v0298849.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: transcription factor MYB104 [Vitis vinifera] gi|225449244|ref|XP_002276341.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 65 65 – –
PANTHER
PTHR10641
31 369 339 4.70E-119 –
PANTHER
PTHR10641:SF524
31 369 339 4.70E-119 –
ProSiteProfiles
PS51294
55 106 52 19.571
IPR017930
SUPERFAMILY
SSF46689
57 153 97 2.48E-31
IPR009057
SMART
SM00717
59 108 50 2.00E-14
IPR001005
Pfam
PF00249
60 105 46 3.60E-16
IPR001005
Gene3D
G3DSA:1.10.10.60
61 113 53 7.90E-26
IPR009057
CDD
cd00167
62 104 43 4.00E-14 –
ProSiteProfiles
PS51294
107 161 55 26.661
IPR017930
SMART
SM00717
111 159 49 1.90E-18
IPR001005
Pfam
PF00249
112 156 45 1.50E-16
IPR001005
Gene3D
G3DSA:1.10.10.60
114 160 47 5.70E-24
IPR009057
CDD
cd00167
114 157 44 2.88E-14 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 16

Expression data

Expression pattern

Expression pattern of Lj0g3v0298849.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0298849.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.