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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0302229 |
| Transcript ID | Lj0g3v0302229.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic-like [Glycine max] gi|356577722|ref|XP_003556972.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 249 | 249 | 0 | – | |
| PANTHER | 1 | 249 | 249 | 0 | – | |
| ProSiteProfiles | 6 | 40 | 35 | 10.073 | ||
| TIGRFAM | 8 | 42 | 35 | 2.50E-06 | ||
| Pfam | 8 | 38 | 31 | 8.50E-04 | ||
| ProSiteProfiles | 41 | 75 | 35 | 5.097 | ||
| ProSiteProfiles | 77 | 108 | 32 | 6.96 | ||
| Pfam | 92 | 110 | 19 | 1.1 | ||
| Gene3D | 106 | 158 | 53 | 1.00E-05 | ||
| ProSiteProfiles | 109 | 143 | 35 | 11.082 | ||
| Pfam | 111 | 140 | 30 | 1.10E-04 | ||
| TIGRFAM | 111 | 144 | 34 | 1.10E-04 | ||
| ProSiteProfiles | 144 | 178 | 35 | 6.314 | ||
| Pfam | 213 | 261 | 49 | 1.90E-12 | ||
| ProSiteProfiles | 213 | 248 | 36 | 11.356 | ||
| ProSiteProfiles | 249 | 283 | 35 | 7.015 | ||
| ProSiteProfiles | 284 | 318 | 35 | 7.366 | ||
| PANTHER | 285 | 593 | 309 | 0 | – | |
| PANTHER | 285 | 593 | 309 | 0 | – | |
| Gene3D | 287 | 342 | 56 | 1.00E-05 | ||
| Pfam | 289 | 314 | 26 | 0.005 | ||
| TIGRFAM | 289 | 315 | 27 | 0.0026 | ||
| ProSiteProfiles | 349 | 383 | 35 | 6.423 | ||
| ProSiteProfiles | 384 | 414 | 31 | 8.528 | ||
| Gene3D | 385 | 451 | 67 | 1.00E-05 | ||
| TIGRFAM | 389 | 415 | 27 | 0.0017 | ||
| ProSiteProfiles | 415 | 449 | 35 | 12.945 | ||
| Pfam | 415 | 462 | 48 | 8.00E-13 | ||
| TIGRFAM | 417 | 450 | 34 | 8.10E-09 | ||
| ProSiteProfiles | 450 | 485 | 36 | 7.98 | ||
| ProSiteProfiles | 486 | 516 | 31 | 6.675 | ||
| Pfam | 490 | 513 | 24 | 0.08 | ||
| ProSiteProfiles | 518 | 548 | 31 | 5.064 | ||
| Gene3D | 519 | 571 | 53 | 1.00E-05 | ||
| ProSiteProfiles | 552 | 586 | 35 | 6.61 | ||
| Pfam | 589 | 712 | 124 | 2.60E-44 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj0g3v0302229.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0302229.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.