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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0305469 |
| Transcript ID | Lj0g3v0305469.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] gi|356516029|ref|XP_003526699.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 96 | 96 | – | – | |
| PANTHER | 6 | 64 | 59 | 0 | – | |
| PANTHER | 6 | 64 | 59 | 0 | – | |
| PANTHER | 81 | 284 | 204 | 0 | – | |
| PANTHER | 81 | 284 | 204 | 0 | – | |
| SUPERFAMILY | 85 | 285 | 201 | 3.92E-27 | – | |
| Pfam | 94 | 414 | 321 | 4.60E-31 | ||
| Gene3D | 97 | 283 | 187 | 1.50E-15 | – | |
| TMHMM | 97 | 118 | 22 | – | – | |
| Phobius | 97 | 115 | 19 | – | – | |
| Phobius | 116 | 135 | 20 | – | – | |
| Phobius | 136 | 154 | 19 | – | – | |
| TMHMM | 145 | 167 | 23 | – | – | |
| Phobius | 155 | 182 | 28 | – | – | |
| Phobius | 183 | 207 | 25 | – | – | |
| TMHMM | 184 | 206 | 23 | – | – | |
| Phobius | 208 | 218 | 11 | – | – | |
| Phobius | 219 | 238 | 20 | – | – | |
| Phobius | 239 | 257 | 19 | – | – | |
| TMHMM | 258 | 280 | 23 | – | – | |
| Phobius | 258 | 279 | 22 | – | – | |
| Phobius | 280 | 378 | 99 | – | – | |
| PANTHER | 328 | 716 | 389 | 0 | – | |
| PANTHER | 328 | 716 | 389 | 0 | – | |
| SUPERFAMILY | 349 | 409 | 61 | 3.92E-27 | – | |
| Gene3D | 349 | 409 | 61 | 1.50E-15 | – | |
| Phobius | 379 | 401 | 23 | – | – | |
| TMHMM | 379 | 401 | 23 | – | – | |
| Phobius | 402 | 716 | 315 | – | – | |
| SUPERFAMILY | 416 | 609 | 194 | 3.45E-35 | ||
| Gene3D | 419 | 478 | 60 | 1.00E-11 | – | |
| Gene3D | 485 | 603 | 119 | 8.60E-27 | ||
| CDD | 487 | 618 | 132 | 7.89E-18 | – | |
| ProSiteProfiles | 487 | 571 | 85 | 12.969 | ||
| SMART | 487 | 618 | 132 | 4.60E-16 | ||
| Pfam | 507 | 597 | 91 | 1.50E-07 | ||
| ProSiteProfiles | 623 | 652 | 30 | 6.504 | ||
| Coils | 639 | 659 | 21 | – | – | |
| MobiDBLite | 688 | 716 | 29 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ion channel activity | Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Ion transport | The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj0g3v0305469.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0305469.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.