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Lj0g3v0306429.1

Overview

Field Value
Gene ID Lj0g3v0306429
Transcript ID Lj0g3v0306429.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: T-complex protein 1 subunit epsilon-like [Glycine max] gi|356567490|ref|XP_003551952.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11353
1 532 532 2.20E-278 –
TIGRFAM
TIGR02343
3 532 530 3.30E-297
IPR012718
CDD
cd03339
6 531 526 0
IPR012718
Gene3D
G3DSA:1.10.560.10
6 148 143 2.80E-89
IPR027413
SUPERFAMILY
SSF48592
21 151 131 4.84E-81 –
Pfam
PF00118
40 531 492 1.50E-157
IPR002423
PRINTS
PR00304
42 58 17 4.70E-29
IPR017998
ProSitePatterns
PS00750
45 57 13 –
IPR002194
PRINTS
PR00304
64 82 19 4.70E-29
IPR017998
ProSitePatterns
PS00995
94 102 9 –
IPR002194
PRINTS
PR00304
94 113 20 4.70E-29
IPR017998
SUPERFAMILY
SSF54849
156 221 66 9.77E-29 –
Gene3D
G3DSA:3.30.260.10
158 218 61 7.10E-33
IPR027410
SUPERFAMILY
SSF52029
217 385 169 2.36E-53
IPR027409
Gene3D
G3DSA:3.50.7.10
219 380 162 1.30E-60
IPR027409
SUPERFAMILY
SSF54849
375 412 38 9.77E-29 –
PRINTS
PR00304
380 402 23 4.70E-29
IPR017998
Gene3D
G3DSA:3.30.260.10
381 411 31 7.10E-33
IPR027410
SUPERFAMILY
SSF48592
412 531 120 4.84E-81 –
Gene3D
G3DSA:1.10.560.10
412 531 120 2.80E-89
IPR027413
PRINTS
PR00304
414 426 13 4.70E-29
IPR017998

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006457
Biological process Protein folding The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
Subterm of
GO:0051082
Molecular function Unfolded protein binding Interacting selectively and non-covalently with an unfolded protein.
Subterm of

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj0g3v0306429.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0306429.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.