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Lj0g3v0310439.1

Overview

Field	Value
Gene ID	Lj0g3v0310439
Transcript ID	Lj0g3v0310439.1
Related isoforms 1	Lj0g3v0310439.2
Lotus japonicus genome version	MG20 v3.0
Description	Calcium homeostasis endoplasmic reticulum protein [Medicago truncatula] gi\|357442977\|ref\|XP_003591766.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	102	102	–	–
SUPERFAMILY	SSF109905 View details on SSF109905 Search for proteins/transripts with this domain View external data on SSF109905	105	176	72	1.16E-18	IPR000061 Show description in modal box View details on IPR000061 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR12323 View details on PTHR12323 Search for proteins/transripts with this domain View external data on PTHR12323	111	336	226	1.90E-115	–
SMART	SM00648 View details on SM00648 Search for proteins/transripts with this domain View external data on SM00648	128	180	53	7.90E-17	IPR000061 Show description in modal box View details on IPR000061 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF01805 View details on PF01805 Search for proteins/transripts with this domain View external data on PF01805	130	176	47	1.90E-11	IPR000061 Show description in modal box View details on IPR000061 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50128 View details on PS50128 Search for proteins/transripts with this domain View external data on PS50128	130	174	45	11.896	IPR000061 Show description in modal box View details on IPR000061 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51391 View details on PS51391 Search for proteins/transripts with this domain View external data on PS51391	267	337	71	18.959	IPR006569 Show description in modal box View details on IPR006569 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003723 View details of GO:0003723 AmiGO InterPro QuickGO	Molecular function	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.	Subterm of View details of GO:0003676
GO:0006396 View details of GO:0006396 AmiGO InterPro QuickGO	Biological process	RNA processing	Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.	Subterm of View details of GO:0016070 Part of View details of GO:0010467

Genome browser

LORE1 insertions 17

Expression data

Expression pattern

Expression pattern of Lj0g3v0310439.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0310439.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.