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Lj0g3v0312259.1

Overview

Field Value
Gene ID Lj0g3v0312259
Transcript ID Lj0g3v0312259.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: DNA repair protein XRCC3 homolog [Glycine max] gi|356567224|ref|XP_003551821.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22942
1 267 267 4.70E-91 –
PANTHER
PTHR22942:SF24
1 267 267 4.70E-91 –
PIRSF
PIRSF005856
1 269 269 4.80E-47
IPR016467
Pfam
PF08423
6 264 259 1.00E-37
IPR013632
ProSiteProfiles
PS50162
10 181 172 43.042
IPR020588
Gene3D
G3DSA:3.40.50.300
11 265 255 3.80E-58
IPR027417
SUPERFAMILY
SSF52540
12 264 253 3.12E-37
IPR027417
CDD
cd01123
15 263 249 1.36E-70
IPR033925

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006281
Biological process DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
Subterm of
GO:0008094
Molecular function DNA-dependent ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction.
Subterm of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj0g3v0312259.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0312259.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.