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Lj0g3v0313349.1

Overview

Field Value
Gene ID Lj0g3v0313349
Transcript ID Lj0g3v0313349.1
Lotus japonicus genome version MG20 v3.0
Description RAB1X [Lotus japonicus] gi|1370172|emb|CAA98163.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SMART
SM00177
1 177 177 0.0058 –
Gene3D
G3DSA:3.40.50.300
3 207 205 6.80E-67
IPR027417
PANTHER
PTHR24073
4 208 205 2.00E-152 –
PANTHER
PTHR24073:SF536
4 208 205 2.00E-152 –
ProSiteProfiles
PS51419
7 208 202 31.038 –
SUPERFAMILY
SSF52540
8 195 188 3.44E-56
IPR027417
SMART
SM00173
9 176 168 1.20E-29 –
SMART
SM00175
12 176 165 8.50E-95 –
CDD
cd01863
12 173 162 1.35E-94 –
PRINTS
PR00449
12 33 22 2.60E-36 –
TIGRFAM
TIGR00231
12 168 157 7.90E-28
IPR005225
Pfam
PF00071
13 174 162 1.30E-53
IPR001806
SMART
SM00174
14 177 164 1.50E-13 –
SMART
SM00176
17 208 192 1.00E-04 –
PRINTS
PR00449
34 50 17 2.60E-36 –
PRINTS
PR00449
52 74 23 2.60E-36 –
PRINTS
PR00449
116 129 14 2.60E-36 –
PRINTS
PR00449
151 173 23 2.60E-36 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj0g3v0313349.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0313349.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.