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Lj0g3v0315599.1

Overview

Field Value
Gene ID Lj0g3v0315599
Transcript ID Lj0g3v0315599.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: Werner syndrome ATP-dependent helicase homolog [Cicer arietinum] gi|502168872|ref|XP_004514484.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.30.420.10
38 226 189 5.20E-51
IPR012337
PANTHER
PTHR13620
39 226 188 3.80E-61 –
CDD
cd06141
56 226 171 4.11E-42 –
SUPERFAMILY
SSF53098
72 226 155 6.07E-33
IPR012337
Pfam
PF01612
77 222 146 3.10E-09
IPR002562

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0006139
Biological process Nucleobase-containing compound metabolic process Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
Subterm of
GO:0008408
Molecular function 3'-5' exonuclease activity Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end.
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj0g3v0315599.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0315599.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.