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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR002562
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 31 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.534s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0099649.1
n.a. PREDICTED: Werner Syndrome-like exonuclease-like [Vitis vinifera] gi|225450557|ref|XP_002277523.1| chr0 42266904 42267986 +
2 domain predictions
3 GO terms
Lj0g3v0101539.1
n.a. PREDICTED: exosome component 10-like [Cicer arietinum] gi|502091938|ref|XP_004489673.1| chr0 43093755 43097625 +
3 domain predictions
3 GO terms
Lj0g3v0129439.1
n.a. Polynucleotidyl transferase isoform 1 [Theobroma cacao] gi|508719716|gb|EOY11613.1| chr0 58567031 58573316 -
3 domain predictions
3 GO terms
Lj0g3v0182059.1
n.a. n.a. chr0 88920497 88921299 +
2 domain predictions
3 GO terms
Lj0g3v0272529.1
n.a. PREDICTED: probable exonuclease mut-7 homolog isoform X2 [Cicer arietinum] gi|502124374|ref|XP_004498500.1| chr0 141217484 141225194 +
3 domain predictions
3 GO terms
Lj0g3v0307559.1
n.a. PREDICTED: Werner Syndrome-like exonuclease-like [Vitis vinifera] gi|225450557|ref|XP_002277523.1| chr0 160547977 160548639 +
2 domain predictions
3 GO terms
Lj0g3v0315599.1
n.a. PREDICTED: Werner syndrome ATP-dependent helicase homolog [Cicer arietinum] gi|502168872|ref|XP_004514484.1| chr0 164746888 164748066 +
2 domain predictions
3 GO terms
Lj0g3v0357369.1
n.a. 3-5 exonuclease/ nucleic acid binding protein [Medicago truncatula] gi|357448871|ref|XP_003594711.1| chr0 188153733 188154653 +
2 domain predictions
3 GO terms
Lj1g3v3976000.1
n.a. PREDICTED: exosome component 10-like isoform X1 [Cicer arietinum] gi|502107238|ref|XP_004493202.1| chr1 47137183 47148386 +
3 domain predictions
3 GO terms
Lj3g3v2905160.1
n.a. Exosome complex exonuclease RRP6 [Medicago truncatula] gi|357471299|ref|XP_003605934.1| chr3 36068167 36074786 -
2 domain predictions
3 GO terms
Lj3g3v2906190.1
n.a. Exosome complex exonuclease RRP6 [Medicago truncatula] gi|357471299|ref|XP_003605934.1| chr3 36104263 36111021 -
2 domain predictions
3 GO terms
Lj3g3v2908390.1
n.a. Exosome complex exonuclease RRP6 [Medicago truncatula] gi|357471299|ref|XP_003605934.1| chr3 36196282 36204254 -
3 domain predictions
3 GO terms
Lj5g3v0348750.1
n.a. PREDICTED: exonuclease 3'-5' domain-containing protein 1-like [Cicer arietinum] gi|502125450|ref|XP_004498930.1| chr5 3392382 3399872 -
3 domain predictions
3 GO terms
Lj5g3v0348750.2
n.a. PREDICTED: exonuclease 3'-5' domain-containing protein 1-like [Cicer arietinum] gi|502125450|ref|XP_004498930.1| chr5 3393342 3399872 -
3 domain predictions
3 GO terms
Lj6g3v1008190.1
n.a. PREDICTED: Werner Syndrome-like exonuclease-like [Glycine max] gi|356523231|ref|XP_003530245.1| chr6 11138958 11140365 -
3 domain predictions
3 GO terms
LotjaGi1g1v0227800.1
n.a. Werner Syndrome-like exonuclease; TAIR: AT2G36110.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase; TrEMBL-Plants: tr|C6T412|C6T412_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0227800 LjG1.1_chr1 52776605 52779505 +
2 domain predictions
3 GO terms
LotjaGi1g1v0227800.2
n.a. Werner Syndrome-like exonuclease; TAIR: AT2G36110.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase; TrEMBL-Plants: tr|C6T412|C6T412_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0227800 LjG1.1_chr1 52776605 52779505 +
2 domain predictions
3 GO terms
LotjaGi1g1v0573100.1
n.a. Werner Syndrome-like exonuclease; TAIR: AT3G12410.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q84LH3|WEX_ARATH Werner Syndrome-like exonuclease; TrEMBL-Plants: tr|I3SWT4|I3SWT4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0573100 LjG1.1_chr1 110686514 110688341 +
3 domain predictions
3 GO terms
LotjaGi1g1v0573500.1
n.a. Werner syndrome-like exonuclease; TAIR: AT3G12460.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase; TrEMBL-Plants: tr|A0A0S3RUI4|A0A0S3RUI4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0573500 LjG1.1_chr1 110756455 110757625 -
2 domain predictions
3 GO terms
LotjaGi1g1v0646900.1
n.a. 3'-5' exonuclease domain-containing family protein; TAIR: AT5G35910.1 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein; Swiss-Prot: sp|A9LLI7|RP6L2_ARATH Protein RRP6-like 2; TrEMBL-Plants: tr|A0A151TSU8|A0A151TSU8_CAJCA Exosome component 10; Found in the gene: LotjaGi1g1v0646900 LjG1.1_chr1 120424292 120436386 +
3 domain predictions
3 GO terms
LotjaGi2g1v0108600.1
n.a. 3'-5' exonuclease domain-containing family protein; TAIR: AT5G35910.1 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein; Swiss-Prot: sp|A9LLI7|RP6L2_ARATH Protein RRP6-like 2; TrEMBL-Plants: tr|I1MW66|I1MW66_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0108600 LjG1.1_chr2 37435511 37450908 -
3 domain predictions
3 GO terms
LotjaGi2g1v0197200_LC.1
n.a. Werner Syndrome-like exonuclease; TAIR: AT5G48350.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|B4JF25|WRNXO_DROGR Werner Syndrome-like exonuclease; TrEMBL-Plants: tr|V7CGU9|V7CGU9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0197200_LC LjG1.1_chr2 63217045 63220529 -
2 domain predictions
3 GO terms
LotjaGi3g1v0466600.1
n.a. 3'-5' exonuclease domain protein; TAIR: AT2G32415.1 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein; Swiss-Prot: sp|A9LLI8|RP6L3_ARATH Protein RRP6-like 3; TrEMBL-Plants: tr|A0A151S0B7|A0A151S0B7_CAJCA Exosome complex exonuclease RRP6; Found in the gene: LotjaGi3g1v0466600 LjG1.1_chr3 88201773 88210310 -
3 domain predictions
3 GO terms
LotjaGi4g1v0197800.1
n.a. DNA polymerase I; TAIR: AT1G50840.1 polymerase gamma 2; Swiss-Prot: sp|F4I6M1|POLIA_ARATH DNA polymerase I A, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A151U285|A0A151U285_CAJCA DNA polymerase I; Found in the gene: LotjaGi4g1v0197800 LjG1.1_chr4 45474277 45495538 +
2 domain predictions
3 GO terms
LotjaGi4g1v0197800.2
n.a. DNA polymerase I; TAIR: AT1G50840.1 polymerase gamma 2; Swiss-Prot: sp|F4I6M1|POLIA_ARATH DNA polymerase I A, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A151U285|A0A151U285_CAJCA DNA polymerase I; Found in the gene: LotjaGi4g1v0197800 LjG1.1_chr4 45474277 45495538 +
2 domain predictions
3 GO terms
LotjaGi5g1v0023500.1
n.a. 3'-5' exonuclease domain-containing protein; TAIR: AT5G24340.1 3'-5' exonuclease domain-containing protein; Swiss-Prot: sp|Q8N9H8|MUT7_HUMAN Exonuclease mut-7 homolog; TrEMBL-Plants: tr|A0A151TVU6|A0A151TVU6_CAJCA Putative exonuclease mut-7 isogeny; Found in the gene: LotjaGi5g1v0023500 LjG1.1_chr5 4134920 4149102 +
3 domain predictions
3 GO terms
LotjaGi5g1v0039700.1
n.a. Exonuclease 3'-5' domain-containing protein 1; TAIR: AT2G25910.1 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein; Swiss-Prot: sp|Q8CDF7|EXD1_MOUSE piRNA biogenesis protein EXD1; TrEMBL-Plants: tr|I1MXE7|I1MXE7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0039700 LjG1.1_chr5 6681290 6695561 -
3 domain predictions
3 GO terms
LotjaGi5g1v0228600.1
n.a. Werner syndrome-like exonuclease; TAIR: AT1G56310.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q8N9H8|MUT7_HUMAN Exonuclease mut-7 homolog; TrEMBL-Plants: tr|A0A0B2QKP3|A0A0B2QKP3_GLYSO Putative exonuclease mut-7 like; Found in the gene: LotjaGi5g1v0228600 LjG1.1_chr5 53580535 53586823 +
3 domain predictions
3 GO terms
LotjaGi5g1v0243100.1
n.a. Werner syndrome-like exonuclease; TAIR: AT5G48350.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|B4JF25|WRNXO_DROGR Werner Syndrome-like exonuclease; TrEMBL-Plants: tr|A0A0L9TY24|A0A0L9TY24_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0243100 LjG1.1_chr5 55188173 55188946 +
2 domain predictions
3 GO terms
LotjaGi6g1v0040600.1
n.a. Werner Syndrome-like exonuclease; TAIR: AT4G13870.2 Werner syndrome-like exonuclease; Swiss-Prot: sp|Q84LH3|WEX_ARATH Werner Syndrome-like exonuclease; TrEMBL-Plants: tr|I3SIM3|I3SIM3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0040600 LjG1.1_chr6 7857812 7863977 -
3 domain predictions
3 GO terms
LotjaGi6g1v0163900.1
n.a. DNA polymerase I; TAIR: AT1G50840.1 polymerase gamma 2; Swiss-Prot: sp|F4I6M1|POLIA_ARATH DNA polymerase I A, chloroplastic/mitochondrial; TrEMBL-Plants: tr|G7J1V4|G7J1V4_MEDTR PolI-like B DNA polymerase; Found in the gene: LotjaGi6g1v0163900 LjG1.1_chr6 44774589 44801031 -
2 domain predictions
3 GO terms