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PF01612

Source: Pfam

Description

3'-5' exonuclease

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0006139
Biological process Nucleobase-containing compound metabolic process Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
Subterm of
GO:0008408
Molecular function 3'-5' exonuclease activity Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end.
Subterm of

Associated Lotus transcripts 31

Transcript Name Description Predicted domains Domain count
Lj0g3v0099649.1
– PREDICTED: Werner Syndrome-like exonuclease-like [Vitis vinifera] gi|225450557|ref|XP_002277523.1|
Domains
8
Lj0g3v0101539.1
– PREDICTED: exosome component 10-like [Cicer arietinum] gi|502091938|ref|XP_004489673.1|
Domains
8
Lj0g3v0129439.1
– Polynucleotidyl transferase isoform 1 [Theobroma cacao] gi|508719716|gb|EOY11613.1|
Domains
8
Lj0g3v0182059.1
–
Domains
6
Lj0g3v0272529.1
– PREDICTED: probable exonuclease mut-7 homolog isoform X2 [Cicer arietinum] gi|502124374|ref|XP_004498500.1|
Domains
11
Lj0g3v0307559.1
– PREDICTED: Werner Syndrome-like exonuclease-like [Vitis vinifera] gi|225450557|ref|XP_002277523.1|
Domains
8
Lj0g3v0315599.1
– PREDICTED: Werner syndrome ATP-dependent helicase homolog [Cicer arietinum] gi|502168872|ref|XP_004514484.1|
Domains
7
Lj0g3v0357369.1
– 3-5 exonuclease/ nucleic acid binding protein [Medicago truncatula] gi|357448871|ref|XP_003594711.1|
Domains
8
Lj1g3v3976000.1
– PREDICTED: exosome component 10-like isoform X1 [Cicer arietinum] gi|502107238|ref|XP_004493202.1|
Domains
19
Lj3g3v2905160.1
– Exosome complex exonuclease RRP6 [Medicago truncatula] gi|357471299|ref|XP_003605934.1|
Domains
12
Lj3g3v2906190.1
– Exosome complex exonuclease RRP6 [Medicago truncatula] gi|357471299|ref|XP_003605934.1|
Domains
10
Lj3g3v2908390.1
– Exosome complex exonuclease RRP6 [Medicago truncatula] gi|357471299|ref|XP_003605934.1|
Domains
17
Lj5g3v0348750.1
– PREDICTED: exonuclease 3'-5' domain-containing protein 1-like [Cicer arietinum] gi|502125450|ref|XP_004498930.1|
Domains
18
Lj5g3v0348750.2
– PREDICTED: exonuclease 3'-5' domain-containing protein 1-like [Cicer arietinum] gi|502125450|ref|XP_004498930.1|
Domains
16
Lj6g3v1008190.1
– PREDICTED: Werner Syndrome-like exonuclease-like [Glycine max] gi|356523231|ref|XP_003530245.1|
Domains
8
LotjaGi1g1v0227800.1
– Werner Syndrome-like exonuclease; TAIR: AT2G36110.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase; TrEMBL-Plants: tr|C6T412|C6T412_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0227800
Domains
9
LotjaGi1g1v0227800.2
– Werner Syndrome-like exonuclease; TAIR: AT2G36110.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase; TrEMBL-Plants: tr|C6T412|C6T412_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0227800
Domains
9
LotjaGi1g1v0573100.1
– Werner Syndrome-like exonuclease; TAIR: AT3G12410.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q84LH3|WEX_ARATH Werner Syndrome-like exonuclease; TrEMBL-Plants: tr|I3SWT4|I3SWT4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0573100
Domains
10
LotjaGi1g1v0573500.1
– Werner syndrome-like exonuclease; TAIR: AT3G12460.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase; TrEMBL-Plants: tr|A0A0S3RUI4|A0A0S3RUI4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0573500
Domains
9
LotjaGi1g1v0646900.1
– 3'-5' exonuclease domain-containing family protein; TAIR: AT5G35910.1 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein; Swiss-Prot: sp|A9LLI7|RP6L2_ARATH Protein RRP6-like 2; TrEMBL-Plants: tr|A0A151TSU8|A0A151TSU8_CAJCA Exosome component 10; Found in the gene: LotjaGi1g1v0646900
Domains
20
LotjaGi2g1v0108600.1
– 3'-5' exonuclease domain-containing family protein; TAIR: AT5G35910.1 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein; Swiss-Prot: sp|A9LLI7|RP6L2_ARATH Protein RRP6-like 2; TrEMBL-Plants: tr|I1MW66|I1MW66_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0108600
Domains
18
LotjaGi2g1v0197200_LC.1
– Werner Syndrome-like exonuclease; TAIR: AT5G48350.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|B4JF25|WRNXO_DROGR Werner Syndrome-like exonuclease; TrEMBL-Plants: tr|V7CGU9|V7CGU9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0197200_LC
Domains
9
LotjaGi3g1v0466600.1
– 3'-5' exonuclease domain protein; TAIR: AT2G32415.1 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein; Swiss-Prot: sp|A9LLI8|RP6L3_ARATH Protein RRP6-like 3; TrEMBL-Plants: tr|A0A151S0B7|A0A151S0B7_CAJCA Exosome complex exonuclease RRP6; Found in the gene: LotjaGi3g1v0466600
Domains
18
LotjaGi4g1v0197800.1
– DNA polymerase I; TAIR: AT1G50840.1 polymerase gamma 2; Swiss-Prot: sp|F4I6M1|POLIA_ARATH DNA polymerase I A, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A151U285|A0A151U285_CAJCA DNA polymerase I; Found in the gene: LotjaGi4g1v0197800
Domains
26
LotjaGi4g1v0197800.2
– DNA polymerase I; TAIR: AT1G50840.1 polymerase gamma 2; Swiss-Prot: sp|F4I6M1|POLIA_ARATH DNA polymerase I A, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A151U285|A0A151U285_CAJCA DNA polymerase I; Found in the gene: LotjaGi4g1v0197800
Domains
26
LotjaGi5g1v0023500.1
– 3'-5' exonuclease domain-containing protein; TAIR: AT5G24340.1 3'-5' exonuclease domain-containing protein; Swiss-Prot: sp|Q8N9H8|MUT7_HUMAN Exonuclease mut-7 homolog; TrEMBL-Plants: tr|A0A151TVU6|A0A151TVU6_CAJCA Putative exonuclease mut-7 isogeny; Found in the gene: LotjaGi5g1v0023500
Domains
12
LotjaGi5g1v0039700.1
– Exonuclease 3'-5' domain-containing protein 1; TAIR: AT2G25910.1 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein; Swiss-Prot: sp|Q8CDF7|EXD1_MOUSE piRNA biogenesis protein EXD1; TrEMBL-Plants: tr|I1MXE7|I1MXE7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0039700
Domains
19
LotjaGi5g1v0228600.1
– Werner syndrome-like exonuclease; TAIR: AT1G56310.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q8N9H8|MUT7_HUMAN Exonuclease mut-7 homolog; TrEMBL-Plants: tr|A0A0B2QKP3|A0A0B2QKP3_GLYSO Putative exonuclease mut-7 like; Found in the gene: LotjaGi5g1v0228600
Domains
9
LotjaGi5g1v0243100.1
– Werner syndrome-like exonuclease; TAIR: AT5G48350.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|B4JF25|WRNXO_DROGR Werner Syndrome-like exonuclease; TrEMBL-Plants: tr|A0A0L9TY24|A0A0L9TY24_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0243100
Domains
9
LotjaGi6g1v0040600.1
– Werner Syndrome-like exonuclease; TAIR: AT4G13870.2 Werner syndrome-like exonuclease; Swiss-Prot: sp|Q84LH3|WEX_ARATH Werner Syndrome-like exonuclease; TrEMBL-Plants: tr|I3SIM3|I3SIM3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0040600
Domains
10
LotjaGi6g1v0163900.1
– DNA polymerase I; TAIR: AT1G50840.1 polymerase gamma 2; Swiss-Prot: sp|F4I6M1|POLIA_ARATH DNA polymerase I A, chloroplastic/mitochondrial; TrEMBL-Plants: tr|G7J1V4|G7J1V4_MEDTR PolI-like B DNA polymerase; Found in the gene: LotjaGi6g1v0163900
Domains
20

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 3.23