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Lj0g3v0318099.1

Overview

Field Value
Gene ID Lj0g3v0318099
Transcript ID Lj0g3v0318099.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: glucan 1,3-beta-glucosidase A-like [Glycine max] gi|356548252|ref|XP_003542517.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 6 6 – –
Phobius
TRANSMEMBRANE
7 26 20 – –
TMHMM
TMhelix
9 26 18 – –
PANTHER
PTHR10551:SF12
19 508 490 0 –
PANTHER
PTHR10551
19 508 490 0
IPR010431
Phobius
NON_CYTOPLASMIC_DOMAIN
27 508 482 – –
Gene3D
G3DSA:3.20.20.80
32 71 40 4.80E-133
IPR013781
SUPERFAMILY
SSF51445
34 71 38 2.29E-90
IPR017853
SUPERFAMILY
SSF50405
70 184 115 8.50E-17
IPR008999
Gene3D
G3DSA:2.80.10.50
72 196 125 1.70E-16 –
Gene3D
G3DSA:3.20.20.80
203 506 304 4.80E-133
IPR013781
SUPERFAMILY
SSF51445
203 506 304 2.29E-90
IPR017853
Pfam
PF00150
219 489 271 8.80E-24
IPR001547

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004553
Molecular function Hydrolase activity, hydrolyzing O-glycosyl compounds Catalysis of the hydrolysis of any O-glycosyl bond.
Subterm of
GO:0005975
Biological process Carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
Subterm of
GO:0007015
Biological process Actin filament organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments. Includes processes that control the spatial distribution of actin filaments, such as organizing filaments into meshworks, bundles, or other structures, as by cross-linking.
Subterm of
Part of
GO:0051015
Molecular function Actin filament binding Interacting selectively and non-covalently with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits.
Subterm of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj0g3v0318099.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0318099.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.