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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0321809 |
| Transcript ID | Lj0g3v0321809.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g52640, mitochondrial-like [Glycine max] gi|356540361|ref|XP_003538658.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 21 | 419 | 399 | 1.00E-237 | – | |
| PANTHER | 21 | 419 | 399 | 1.00E-237 | – | |
| ProSiteProfiles | 113 | 147 | 35 | 6.533 | ||
| ProSiteProfiles | 149 | 183 | 35 | 8.703 | ||
| Pfam | 158 | 181 | 24 | 1.1 | ||
| ProSiteProfiles | 184 | 214 | 31 | 6.281 | ||
| Gene3D | 195 | 331 | 137 | 9.20E-07 | ||
| ProSiteProfiles | 218 | 252 | 35 | 10.611 | ||
| TIGRFAM | 221 | 253 | 33 | 3.20E-07 | ||
| Pfam | 221 | 250 | 30 | 4.50E-05 | ||
| ProSiteProfiles | 253 | 287 | 35 | 11.805 | ||
| Pfam | 253 | 300 | 48 | 9.20E-14 | ||
| TIGRFAM | 256 | 289 | 34 | 6.30E-08 | ||
| ProSiteProfiles | 288 | 322 | 35 | 11.433 | ||
| TIGRFAM | 290 | 324 | 35 | 2.30E-07 | ||
| Pfam | 322 | 365 | 44 | 3.00E-15 | ||
| ProSiteProfiles | 323 | 357 | 35 | 13.625 | ||
| TIGRFAM | 325 | 359 | 35 | 7.40E-11 | ||
| ProSiteProfiles | 358 | 392 | 35 | 9.065 | ||
| Gene3D | 391 | 418 | 28 | 9.20E-07 | ||
| ProSiteProfiles | 393 | 419 | 27 | 8.988 | ||
| TIGRFAM | 395 | 418 | 24 | 0.0022 | ||
| Pfam | 396 | 418 | 23 | 0.41 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0321809.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0321809.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.