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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0326339 |
| Transcript ID | Lj0g3v0326339.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ER membrane protein complex subunit 6-like isoform X3 [Cicer arietinum] gi|502080345|ref|XP_004486534.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 34 | 34 | – | – | |
| PANTHER | 9 | 120 | 112 | 1.40E-51 | ||
| PANTHER | 9 | 120 | 112 | 1.40E-51 | – | |
| Phobius | 35 | 56 | 22 | – | – | |
| Pfam | 36 | 114 | 79 | 1.60E-17 | ||
| TMHMM | 42 | 64 | 23 | – | – | |
| Phobius | 57 | 61 | 5 | – | – | |
| Phobius | 62 | 82 | 21 | – | – | |
| Phobius | 83 | 93 | 11 | – | – | |
| Phobius | 94 | 114 | 21 | – | – | |
| TMHMM | 95 | 114 | 20 | – | – | |
| Phobius | 115 | 120 | 6 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Endoplasmic reticulum | The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Cellular component | ER membrane protein complex | A transmembrane protein complex located in the ER that is involved in ER-mitochondrial membrane tethering, which is required to facilitate lipid transfer from the ER to the mitochondrial membrane. In S. cerevisiae, it has six members: EMC1, EMC2, AIM27, EMC4, KRE27, and EMC6. |
Expression pattern of Lj0g3v0326339.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0326339.1, powered by CORGI.
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