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Lj0g3v0327279.1

Overview

Field Value
Gene ID Lj0g3v0327279
Transcript ID Lj0g3v0327279.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description Zinc finger CCCH-type with G patch domain-containing protein [Medicago truncatula] gi|357478467|ref|XP_003609519.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.30.1370.50
8 72 65 3.50E-08
IPR001374
Pfam
PF01424
8 65 58 1.70E-06
IPR001374
SUPERFAMILY
SSF82708
9 81 73 6.87E-05
IPR001374
PANTHER
PTHR23329:SF9
59 338 280 6.20E-124 –
PANTHER
PTHR23329
59 338 280 6.20E-124 –
MobiDBLite
mobidb-lite
99 155 57 – –
SMART
SM00443
200 246 47 1.70E-16
IPR000467
Pfam
PF01585
202 246 45 1.10E-15
IPR000467
ProSiteProfiles
PS50174
202 248 47 15.28
IPR000467
MobiDBLite
mobidb-lite
243 290 48 – –
SMART
SM00443
291 337 47 1.40E-13
IPR000467
ProSiteProfiles
PS50174
293 338 46 14.374
IPR000467
Pfam
PF01585
293 336 44 1.60E-15
IPR000467
MobiDBLite
mobidb-lite
308 338 31 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj0g3v0327279.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0327279.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.