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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0327639 |
| Transcript ID | Lj0g3v0327639.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: general transcription factor IIF subunit 2-like [Glycine max] gi|356511855|ref|XP_003524637.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | – | – | |
| PANTHER | 6 | 263 | 258 | 3.10E-166 | – | |
| PANTHER | 6 | 263 | 258 | 3.10E-166 | ||
| SUPERFAMILY | 19 | 129 | 111 | 1.33E-10 | ||
| CDD | 20 | 128 | 109 | 7.48E-18 | – | |
| Pfam | 108 | 259 | 152 | 1.50E-29 | ||
| MobiDBLite | 172 | 197 | 26 | – | – | |
| SUPERFAMILY | 194 | 260 | 67 | 8.43E-20 | ||
| Gene3D | 194 | 260 | 67 | 2.30E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Transcription factor TFIIF complex | A general transcription initiation factor which in humans consists of a heterodimer of an alpha and a beta subunit. Helps recruit RNA polymerase II to the initiation complex and promotes translation elongation. | ||
| Biological process | Transcription by RNA polymerase II | The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs). | ||
| Biological process | Transcription initiation from RNA polymerase II promoter | Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription. |
Expression pattern of Lj0g3v0327639.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0327639.1, powered by CORGI.
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