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IPR011039

Source: InterPro

Description

IPR011039 is a Transcription Factor IIF, Rap30/Rap74, interaction.

<p>Transcription factor IIF (TFIIF), which is essential for eukaryotic transcription by RNA polymerase II. (PolII), consists of a heterodimer of Rap30 (beta) ([interpro:IPR003196]) and Rap74 (alpha) ([interpro:IPR008851]) subunits [[cite:PUB00014142]]. Rap30 and Rap74 have multiple domains that bind to PolII, TFIIB, TAF250 and DNA in interactions that are essential for transcription initiation and elongation. The N-terminal interactions domains of Rap30 and Rap74 are responsible for establishing the dimer interface between the two subunits, this interface being important for TFIIF function [[cite:PUB00011486]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006367
Biological process Transcription initiation from RNA polymerase II promoter Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription.
Subterm of
Part of

Associated Lotus transcripts 15

Transcript Name Description Predicted domains Domain count
Lj0g3v0327639.1
– PREDICTED: general transcription factor IIF subunit 2-like [Glycine max] gi|356511855|ref|XP_003524637.1|
Domains
11
Lj1g3v2140840.1
– PREDICTED: transcription initiation factor IIF subunit beta-like [Glycine max] gi|356518378|ref|XP_003527856.1|
Domains
11
Lj4g3v0120130.1
– PREDICTED: transcription initiation factor IIF subunit alpha-like [Glycine max] gi|356555722|ref|XP_003546179.1|
Domains
11
Lj4g3v0120130.2
– PREDICTED: transcription initiation factor IIF subunit alpha-like [Glycine max] gi|356555722|ref|XP_003546179.1|
Domains
11
Lj4g3v0120130.3
– PREDICTED: transcription initiation factor IIF subunit alpha-like [Glycine max] gi|356555722|ref|XP_003546179.1|
Domains
11
Lj6g3v1691350.1
– PREDICTED: transcription initiation factor IIF subunit beta-like [Glycine max] gi|356518378|ref|XP_003527856.1|
Domains
11
Lj6g3v1766610.1
– PREDICTED: transcription initiation factor IIF subunit alpha-like isoform X1 [Cicer arietinum] gi|502079291|ref|XP_004486214.1|
Domains
8
Lj6g3v1766610.2
– PREDICTED: transcription initiation factor IIF subunit alpha-like isoform X2 [Cicer arietinum] gi|502079294|ref|XP_004486215.1|
Domains
6
LotjaGi1g1v0424300.1
– Transcription initiation factor IIF subunit beta; TAIR: AT1G75510.1 Transcription initiation factor IIF, beta subunit; Swiss-Prot: sp|O94424|T2FB_SCHPO Transcription initiation factor IIF subunit beta; TrEMBL-Plants: tr|I3T827|I3T827_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0424300
Domains
15
LotjaGi1g1v0424300.2
– Transcription initiation factor IIF subunit beta; TAIR: AT1G75510.1 Transcription initiation factor IIF, beta subunit; Swiss-Prot: sp|O94424|T2FB_SCHPO Transcription initiation factor IIF subunit beta; TrEMBL-Plants: tr|I3T827|I3T827_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0424300
Domains
12
LotjaGi2g1v0102000.1
– Transcription initiation factor IIF subunit beta, putative; TAIR: AT3G52270.1 Transcription initiation factor IIF, beta subunit; Swiss-Prot: sp|Q2T9L9|T2FB_BOVIN General transcription factor IIF subunit 2; TrEMBL-Plants: tr|K7KP46|K7KP46_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0102000
Domains
15
LotjaGi4g1v0008900.1
– Transcription initiation factor IIF subunit alpha; TAIR: AT4G12610.2 transcription initiation factor IIF subunit alpha RAP74; Swiss-Prot: sp|Q9SU25|T2FA_ARATH Transcription initiation factor IIF subunit alpha; TrEMBL-Plants: tr|A0A0S3RA60|A0A0S3RA60_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0008900
Domains
10
LotjaGi4g1v0008900.2
– Transcription initiation factor IIF subunit alpha; TAIR: AT4G12610.2 transcription initiation factor IIF subunit alpha RAP74; Swiss-Prot: sp|Q9SU25|T2FA_ARATH Transcription initiation factor IIF subunit alpha; TrEMBL-Plants: tr|A0A0S3RA60|A0A0S3RA60_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0008900
Domains
10
LotjaGi4g1v0008900.3
– Transcription initiation factor IIF subunit alpha; TAIR: AT4G12610.2 transcription initiation factor IIF subunit alpha RAP74; Swiss-Prot: sp|Q9SU25|T2FA_ARATH Transcription initiation factor IIF subunit alpha; TrEMBL-Plants: tr|A0A0S3RA60|A0A0S3RA60_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0008900
Domains
10
LotjaGi6g1v0287300.1
– Transcription initiation factor IIF subunit alpha; TAIR: AT4G12610.2 transcription initiation factor IIF subunit alpha RAP74; Swiss-Prot: sp|Q9SU25|T2FA_ARATH Transcription initiation factor IIF subunit alpha; TrEMBL-Plants: tr|A0A151T6L6|A0A151T6L6_CAJCA Transcription initiation factor IIF subunit alpha; Found in the gene: LotjaGi6g1v0287300
Domains
10

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 6.67