Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj0g3v0329239.1

Overview

Field Value
Gene ID Lj0g3v0329239
Transcript ID Lj0g3v0329239.1
Lotus japonicus genome version MG20 v3.0
Description Myb-like protein AA [Medicago truncatula] gi|357487099|ref|XP_003613837.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
55 99 45 – –
PANTHER
PTHR10641
79 269 191 1.40E-115 –
PANTHER
PTHR10641:SF473
79 269 191 1.40E-115 –
ProSiteProfiles
PS51294
103 154 52 17.17
IPR017930
SMART
SM00717
107 156 50 2.90E-14
IPR001005
SUPERFAMILY
SSF46689
108 201 94 5.24E-28
IPR009057
Pfam
PF00249
108 153 46 6.60E-16
IPR001005
Gene3D
G3DSA:1.10.10.60
109 161 53 1.30E-25
IPR009057
CDD
cd00167
111 152 42 4.03E-12 –
ProSiteProfiles
PS51294
155 209 55 26.929
IPR017930
SMART
SM00717
159 207 49 1.80E-14
IPR001005
Pfam
PF00249
160 202 43 1.90E-14
IPR001005
Gene3D
G3DSA:1.10.10.60
162 208 47 1.10E-20
IPR009057
CDD
cd00167
162 202 41 1.21E-10 –
MobiDBLite
mobidb-lite
224 246 23 – –
TMHMM
TMhelix
304 326 23 – –
PANTHER
PTHR10641
325 332 8 1.40E-115 –
PANTHER
PTHR10641:SF473
325 332 8 1.40E-115 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj0g3v0329239.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0329239.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.