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Lj0g3v0333779.1

Overview

Field Value
Gene ID Lj0g3v0333779
Transcript ID Lj0g3v0333779.1
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description Plastid transcriptionally active isoform 1 [Theobroma cacao] gi|508715430|gb|EOY07327.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR30265:SF2
31 251 221 3.10E-77 –
PANTHER
PTHR30265
31 251 221 3.10E-77 –
SMART
SM00738
108 224 117 5.20E-18
IPR006645
SUPERFAMILY
SSF82679
109 226 118 3.14E-15
IPR006645
Gene3D
G3DSA:3.30.70.940
110 227 118 8.70E-14
IPR006645
CDD
cd09890
110 221 112 2.36E-44 –
Pfam
PF02357
110 220 111 1.00E-06
IPR006645
Coils
Coil
217 241 25 – –
MobiDBLite
mobidb-lite
246 280 35 – –
SMART
SM00739
289 316 28 0.0084
IPR005824
PANTHER
PTHR30265:SF2
289 341 53 3.10E-77 –
PANTHER
PTHR30265
289 341 53 3.10E-77 –
CDD
cd06091
290 340 51 8.37E-12 –
SUPERFAMILY
SSF50104
291 340 50 6.32E-09
IPR008991
Pfam
PF00467
292 321 30 1.40E-05
IPR005824
Gene3D
G3DSA:2.30.30.30
292 340 49 4.50E-12
IPR014722

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj0g3v0333779.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0333779.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.