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Lj0g3v0334799.3

Overview

Field Value
Gene ID Lj0g3v0334799
Transcript ID Lj0g3v0334799.3
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: 30S ribosomal protein S1 homolog A-like [Cicer arietinum] gi|502093372|ref|XP_004489921.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR15838
31 415 385 5.90E-207 –
PANTHER
PTHR15838:SF1
31 415 385 5.90E-207 –
MobiDBLite
mobidb-lite
89 110 22 – –
SMART
SM00316
117 230 114 41
IPR022967
SUPERFAMILY
SSF50249
238 316 79 6.37E-05
IPR012340
Gene3D
G3DSA:2.40.50.140
245 317 73 1.40E-04 –
SMART
SM00316
246 316 71 7.6
IPR022967
CDD
cd04465
248 316 69 4.68E-11 –
ProSiteProfiles
PS50126
248 316 69 9.379
IPR003029
Pfam
PF00575
255 314 60 1.00E-04
IPR003029
Pfam
PF00575
324 395 72 1.30E-07
IPR003029
Gene3D
G3DSA:2.40.50.140
324 402 79 5.70E-13 –
SUPERFAMILY
SSF50249
324 402 79 4.68E-11
IPR012340
SMART
SM00316
325 396 72 1.30E-10
IPR022967
ProSiteProfiles
PS50126
327 396 70 13.812
IPR003029

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj0g3v0334799.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0334799.3, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.