Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj0g3v0338719.2

Overview

Field Value
Gene ID Lj0g3v0338719
Transcript ID Lj0g3v0338719.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description Pierisin [Medicago truncatula] gi|357514961|ref|XP_003627769.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 11 11 – –
Phobius
TRANSMEMBRANE
12 36 25 – –
TMHMM
TMhelix
13 35 23 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
37 430 394 – –
Gene3D
G3DSA:3.90.210.10
38 142 105 1.10E-06 –
SUPERFAMILY
SSF56399
39 139 101 7.91E-11 –
SUPERFAMILY
SSF50923
189 390 202 1.53E-19
IPR000585
Gene3D
G3DSA:2.110.10.10
189 268 80 3.50E-04
IPR000585
ProSiteProfiles
PS51642
191 244 54 7.602
IPR018487
SMART
SM00120
194 243 50 18
IPR018487
ProSiteProfiles
PS51642
251 302 52 6.964
IPR018487
Gene3D
G3DSA:2.110.10.10
269 399 131 3.20E-14
IPR000585
ProSiteProfiles
PS51642
308 354 47 10.635
IPR018487
SMART
SM00120
311 353 43 1.30E-05
IPR018487
Pfam
PF00045
311 359 49 2.50E-06
IPR018487
ProSiteProfiles
PS51642
360 415 56 9.367
IPR018487
SMART
SM00120
363 417 55 4.8
IPR018487

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj0g3v0338719.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0338719.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.