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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0341439 |
| Transcript ID | Lj0g3v0341439.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g58590-like [Glycine max] gi|356515100|ref|XP_003526239.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 33 | 127 | 95 | 6.30E-269 | – | |
| PANTHER | 33 | 127 | 95 | 6.30E-269 | – | |
| ProSiteProfiles | 47 | 77 | 31 | 7.147 | ||
| Gene3D | 48 | 109 | 62 | 2.80E-04 | ||
| Pfam | 52 | 76 | 25 | 0.1 | ||
| ProSiteProfiles | 78 | 112 | 35 | 13.208 | ||
| Pfam | 78 | 122 | 45 | 6.60E-11 | ||
| TIGRFAM | 80 | 113 | 34 | 3.60E-10 | ||
| ProSiteProfiles | 147 | 177 | 31 | 7.333 | ||
| Pfam | 152 | 177 | 26 | 0.019 | ||
| Gene3D | 176 | 231 | 56 | 2.80E-04 | ||
| ProSiteProfiles | 178 | 212 | 35 | 10.435 | ||
| Pfam | 180 | 210 | 31 | 1.70E-05 | ||
| TIGRFAM | 180 | 213 | 34 | 6.30E-05 | ||
| ProSiteProfiles | 213 | 248 | 36 | 6.193 | ||
| PANTHER | 229 | 415 | 187 | 6.30E-269 | – | |
| PANTHER | 229 | 415 | 187 | 6.30E-269 | – | |
| ProSiteProfiles | 249 | 279 | 31 | 5.7 | ||
| Pfam | 254 | 275 | 22 | 0.44 | ||
| ProSiteProfiles | 280 | 314 | 35 | 11.707 | ||
| Pfam | 280 | 326 | 47 | 7.30E-12 | ||
| TIGRFAM | 282 | 315 | 34 | 4.90E-06 | ||
| ProSiteProfiles | 315 | 349 | 35 | 5.119 | ||
| ProSiteProfiles | 350 | 384 | 35 | 7.015 | ||
| PANTHER | 447 | 466 | 20 | 6.30E-269 | – | |
| PANTHER | 447 | 466 | 20 | 6.30E-269 | – | |
| Gene3D | 449 | 553 | 105 | 2.80E-04 | ||
| Pfam | 508 | 552 | 45 | 1.00E-10 | ||
| PANTHER | 508 | 728 | 221 | 6.30E-269 | – | |
| PANTHER | 508 | 728 | 221 | 6.30E-269 | – | |
| ProSiteProfiles | 509 | 543 | 35 | 11.323 | ||
| TIGRFAM | 511 | 544 | 34 | 1.00E-07 | ||
| ProSiteProfiles | 544 | 578 | 35 | 5.207 | ||
| ProSiteProfiles | 580 | 610 | 31 | 8.342 | ||
| Pfam | 585 | 610 | 26 | 0.0067 | ||
| ProSiteProfiles | 611 | 645 | 35 | 9.723 | ||
| TIGRFAM | 613 | 646 | 34 | 0.0022 | ||
| Pfam | 614 | 642 | 29 | 0.016 | ||
| ProSiteProfiles | 646 | 676 | 31 | 5.952 | ||
| ProSiteProfiles | 682 | 712 | 31 | 5.448 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0341439.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0341439.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.