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Lj0g3v0353049.1

Overview

Field Value
Gene ID Lj0g3v0353049
Transcript ID Lj0g3v0353049.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: tetratricopeptide repeat protein 7B-like [Glycine max] gi|356560871|ref|XP_003548710.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23083:SF39
19 687 669 5.10E-223 –
PANTHER
PTHR23083
19 687 669 5.10E-223 –
Gene3D
G3DSA:1.25.40.10
31 204 174 9.60E-11
IPR011990
SUPERFAMILY
SSF48452
54 81 28 8.23E-09
IPR011990
MobiDBLite
mobidb-lite
91 110 20 – –
SMART
SM00028
119 152 34 63
IPR019734
SUPERFAMILY
SSF48452
121 152 32 8.23E-09
IPR011990
SMART
SM00028
303 336 34 16
IPR019734
Gene3D
G3DSA:1.25.40.10
303 344 42 9.60E-11
IPR011990
SUPERFAMILY
SSF48452
303 339 37 8.23E-09
IPR011990
SUPERFAMILY
SSF48452
407 452 46 8.23E-09
IPR011990
ProSiteProfiles
PS50293
407 492 86 6.768
IPR013026
Gene3D
G3DSA:1.25.40.10
408 684 277 5.40E-29
IPR011990
SUPERFAMILY
SSF48452
416 524 109 2.85E-05
IPR011990
Pfam
PF13432
429 488 60 0.0026 –
SMART
SM00028
459 492 34 250
IPR019734
SUPERFAMILY
SSF48452
546 681 136 8.10E-17
IPR011990
ProSiteProfiles
PS50293
549 686 138 20.141
IPR013026
SMART
SM00028
549 582 34 0.28
IPR019734
SMART
SM00028
583 616 34 47
IPR019734
Pfam
PF13432
635 680 46 0.0056 –
SMART
SM00028
653 686 34 12
IPR019734

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 22

Expression data

Expression pattern

Expression pattern of Lj0g3v0353049.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0353049.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.