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| Field | Value |
|---|---|
| Gene ID | Lj1g3v0001030 |
| Transcript ID | Lj1g3v0001030.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357508205|ref|XP_003624391.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 544 | 541 | 0 | – | |
| PANTHER | 4 | 544 | 541 | 0 | – | |
| ProSiteProfiles | 18 | 48 | 31 | 7.805 | ||
| TIGRFAM | 23 | 51 | 29 | 0.0014 | ||
| Gene3D | 27 | 49 | 23 | 4.70E-05 | ||
| ProSiteProfiles | 49 | 83 | 35 | 10.468 | ||
| Pfam | 49 | 96 | 48 | 1.30E-08 | ||
| TIGRFAM | 51 | 85 | 35 | 3.40E-06 | ||
| Gene3D | 130 | 182 | 53 | 4.70E-05 | ||
| ProSiteProfiles | 132 | 162 | 31 | 6.566 | ||
| Pfam | 137 | 157 | 21 | 1.2 | ||
| ProSiteProfiles | 164 | 197 | 34 | 6.314 | ||
| ProSiteProfiles | 198 | 232 | 35 | 6.237 | ||
| ProSiteProfiles | 233 | 263 | 31 | 7.388 | ||
| Gene3D | 236 | 260 | 25 | 4.70E-05 | ||
| Pfam | 238 | 264 | 27 | 0.072 | ||
| ProSiteProfiles | 264 | 298 | 35 | 9.295 | ||
| Pfam | 267 | 296 | 30 | 0.94 | ||
| ProSiteProfiles | 299 | 333 | 35 | 5.766 | ||
| Gene3D | 333 | 402 | 70 | 4.70E-05 | ||
| ProSiteProfiles | 334 | 364 | 31 | 8.035 | ||
| TIGRFAM | 339 | 364 | 26 | 6.60E-04 | ||
| Pfam | 339 | 364 | 26 | 6.60E-04 | ||
| ProSiteProfiles | 365 | 399 | 35 | 10.928 | ||
| Pfam | 367 | 394 | 28 | 9.90E-09 | ||
| TIGRFAM | 367 | 396 | 30 | 2.90E-07 | ||
| ProSiteProfiles | 401 | 436 | 36 | 7.344 | ||
| TIGRFAM | 403 | 437 | 35 | 0.0019 | ||
| ProSiteProfiles | 437 | 467 | 31 | 6.665 | ||
| Pfam | 441 | 464 | 24 | 0.041 | ||
| Gene3D | 470 | 514 | 45 | 4.70E-05 | ||
| ProSiteProfiles | 503 | 537 | 35 | 6.752 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v0001030.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v0001030.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.