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Lj1g3v0130080.1

Overview

Field Value
Gene ID Lj1g3v0130080
Transcript ID Lj1g3v0130080.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: TOM1-like protein 2-like [Cicer arietinum] gi|502159182|ref|XP_004511421.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF036948
33 376 344 2.90E-110
IPR014645
PANTHER
PTHR13856:SF93
36 377 342 7.80E-178 –
PANTHER
PTHR13856
36 377 342 7.80E-178 –
Gene3D
G3DSA:1.25.40.90
44 185 142 1.00E-43
IPR008942
SUPERFAMILY
SSF48464
45 185 141 1.44E-40
IPR008942
Pfam
PF00790
48 181 134 1.60E-27
IPR002014
CDD
cd03561
50 179 130 7.24E-45 –
SMART
SM00288
50 181 132 3.40E-32
IPR002014
ProSiteProfiles
PS50179
57 185 129 38.272
IPR002014
SUPERFAMILY
SSF89009
182 315 134 8.63E-28 –
Gene3D
G3DSA:1.20.58.160
218 318 101 3.40E-31
IPR004152
ProSiteProfiles
PS50909
228 315 88 15.721
IPR004152
CDD
cd14231
237 312 76 9.50E-29 –
Pfam
PF03127
241 315 75 2.20E-18
IPR004152

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006886
Biological process Intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
Subterm of
Part of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj1g3v0130080.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v0130080.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.