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| Field | Value |
|---|---|
| Gene ID | Lj1g3v0318660 |
| Transcript ID | Lj1g3v0318660.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|15222662|ref|NP_176613.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 17 | 548 | 532 | 0 | – | |
| PANTHER | 17 | 548 | 532 | 0 | – | |
| ProSiteProfiles | 37 | 67 | 31 | 6.522 | ||
| Gene3D | 40 | 118 | 79 | 1.10E-07 | ||
| ProSiteProfiles | 68 | 102 | 35 | 10.83 | ||
| Pfam | 68 | 115 | 48 | 4.80E-09 | ||
| TIGRFAM | 70 | 103 | 34 | 5.70E-06 | ||
| ProSiteProfiles | 103 | 137 | 35 | 5.261 | ||
| ProSiteProfiles | 138 | 168 | 31 | 7.377 | ||
| Pfam | 141 | 163 | 23 | 0.027 | ||
| ProSiteProfiles | 169 | 203 | 35 | 9.909 | ||
| Pfam | 171 | 197 | 27 | 0.037 | ||
| ProSiteProfiles | 239 | 269 | 31 | 5.557 | ||
| ProSiteProfiles | 270 | 304 | 35 | 9.471 | ||
| Pfam | 272 | 298 | 27 | 3.20E-05 | ||
| TIGRFAM | 272 | 300 | 29 | 3.50E-04 | ||
| Gene3D | 273 | 304 | 32 | 1.10E-07 | ||
| ProSiteProfiles | 305 | 339 | 35 | 5.218 | ||
| ProSiteProfiles | 340 | 370 | 31 | 6.928 | ||
| Pfam | 371 | 419 | 49 | 3.80E-12 | ||
| ProSiteProfiles | 371 | 405 | 35 | 11.498 | ||
| TIGRFAM | 373 | 407 | 35 | 2.00E-07 | ||
| ProSiteProfiles | 406 | 436 | 31 | 10.172 | ||
| TIGRFAM | 409 | 436 | 28 | 3.60E-05 | ||
| ProSiteProfiles | 442 | 472 | 31 | 5.36 | ||
| Gene3D | 443 | 527 | 85 | 1.10E-07 | ||
| ProSiteProfiles | 474 | 508 | 35 | 5.261 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v0318660.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v0318660.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.