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Lj1g3v0416400.1

Overview

Field Value
Gene ID Lj1g3v0416400
Transcript ID Lj1g3v0416400.1
Lotus japonicus genome version MG20 v3.0
Description MYB transcription factor MYB143 [Glycine max] gi|351723925|ref|NP_001236016.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12374
1 207 207 4.60E-89 –
PANTHER
PTHR12374:SF26
1 207 207 4.60E-89 –
ProSiteProfiles
PS51294
68 125 58 17.266
IPR017930
SUPERFAMILY
SSF46689
71 125 55 1.20E-16
IPR009057
TIGRFAM
TIGR01557
72 123 52 8.40E-17
IPR006447
SMART
SM00717
73 123 51 4.20E-10
IPR001005
Gene3D
G3DSA:1.10.10.60
75 120 46 2.90E-11
IPR009057
CDD
cd00167
76 121 46 2.93E-09 –
Pfam
PF00249
76 120 45 2.00E-11
IPR001005
MobiDBLite
mobidb-lite
235 279 45 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj1g3v0416400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v0416400.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.