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| Field | Value |
|---|---|
| Gene ID | Lj1g3v0579730 |
| Transcript ID | Lj1g3v0579730.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g18485-like [Glycine max] gi|356519174|ref|XP_003528249.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 66 | 59 | 0 | – | |
| PANTHER | 8 | 66 | 59 | 0 | – | |
| ProSiteProfiles | 110 | 140 | 31 | 6.127 | ||
| PANTHER | 124 | 383 | 260 | 0 | – | |
| PANTHER | 124 | 383 | 260 | 0 | – | |
| ProSiteProfiles | 141 | 176 | 36 | 8.835 | ||
| TIGRFAM | 144 | 177 | 34 | 0.0029 | ||
| Pfam | 144 | 169 | 26 | 5.50E-04 | ||
| ProSiteProfiles | 213 | 247 | 35 | 9.065 | ||
| Pfam | 218 | 244 | 27 | 0.0028 | ||
| ProSiteProfiles | 281 | 315 | 35 | 5.514 | ||
| ProSiteProfiles | 316 | 346 | 31 | 6.138 | ||
| Pfam | 321 | 341 | 21 | 0.031 | ||
| ProSiteProfiles | 347 | 377 | 31 | 9.109 | ||
| Pfam | 349 | 376 | 28 | 2.40E-05 | ||
| TIGRFAM | 349 | 383 | 35 | 2.00E-04 | ||
| ProSiteProfiles | 419 | 449 | 31 | 6.862 | ||
| Gene3D | 449 | 472 | 24 | 3.60E-08 | ||
| ProSiteProfiles | 450 | 484 | 35 | 11.575 | ||
| Pfam | 450 | 497 | 48 | 3.20E-09 | ||
| PANTHER | 451 | 470 | 20 | 0 | – | |
| PANTHER | 451 | 470 | 20 | 0 | – | |
| TIGRFAM | 453 | 486 | 34 | 5.40E-07 | ||
| ProSiteProfiles | 485 | 519 | 35 | 6.982 | ||
| Gene3D | 512 | 600 | 89 | 3.60E-08 | ||
| ProSiteProfiles | 520 | 550 | 31 | 6.445 | ||
| Pfam | 526 | 550 | 25 | 0.23 | ||
| PANTHER | 550 | 830 | 281 | 0 | – | |
| PANTHER | 550 | 830 | 281 | 0 | – | |
| ProSiteProfiles | 551 | 585 | 35 | 11.641 | ||
| Pfam | 553 | 582 | 30 | 3.10E-07 | ||
| TIGRFAM | 553 | 585 | 33 | 9.10E-07 | ||
| ProSiteProfiles | 621 | 651 | 31 | 6.281 | ||
| ProSiteProfiles | 652 | 686 | 35 | 11.948 | ||
| Pfam | 652 | 698 | 47 | 1.10E-09 | ||
| Gene3D | 655 | 813 | 159 | 3.60E-08 | ||
| TIGRFAM | 655 | 688 | 34 | 5.60E-09 | ||
| ProSiteProfiles | 687 | 722 | 36 | 6.347 | ||
| ProSiteProfiles | 723 | 753 | 31 | 7.399 | ||
| Pfam | 727 | 751 | 25 | 0.16 | ||
| ProSiteProfiles | 755 | 785 | 31 | 6.478 | ||
| ProSiteProfiles | 789 | 823 | 35 | 7.607 | ||
| Pfam | 826 | 949 | 124 | 1.10E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj1g3v0579730.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v0579730.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.