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| Field | Value |
|---|---|
| Gene ID | Lj1g3v0911990 |
| Transcript ID | Lj1g3v0911990.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat protein [Medicago truncatula] gi|357518009|ref|XP_003629293.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 10 | 66 | 57 | 0 | – | |
| PANTHER | 10 | 66 | 57 | 0 | – | |
| ProSiteProfiles | 31 | 61 | 31 | 8.298 | ||
| Pfam | 34 | 59 | 26 | 0.015 | ||
| Gene3D | 35 | 141 | 107 | 5.90E-10 | ||
| ProSiteProfiles | 62 | 96 | 35 | 9.043 | ||
| Pfam | 64 | 92 | 29 | 0.025 | ||
| Pfam | 95 | 123 | 29 | 5.20E-05 | ||
| TIGRFAM | 95 | 126 | 32 | 8.50E-06 | ||
| ProSiteProfiles | 97 | 123 | 27 | 6.303 | ||
| ProSiteProfiles | 124 | 158 | 35 | 9.832 | ||
| TIGRFAM | 127 | 152 | 26 | 5.90E-06 | ||
| Pfam | 127 | 151 | 25 | 2.90E-06 | ||
| PANTHER | 129 | 213 | 85 | 0 | – | |
| PANTHER | 129 | 213 | 85 | 0 | – | |
| ProSiteProfiles | 199 | 229 | 31 | 6.412 | ||
| Gene3D | 202 | 288 | 87 | 5.90E-10 | ||
| ProSiteProfiles | 230 | 260 | 31 | 8.254 | ||
| Pfam | 233 | 255 | 23 | 0.01 | ||
| PANTHER | 245 | 672 | 428 | 0 | – | |
| PANTHER | 245 | 672 | 428 | 0 | – | |
| ProSiteProfiles | 261 | 295 | 35 | 10.227 | ||
| Pfam | 263 | 293 | 31 | 1.80E-07 | ||
| TIGRFAM | 263 | 296 | 34 | 7.70E-07 | ||
| ProSiteProfiles | 331 | 361 | 31 | 6.993 | ||
| Pfam | 336 | 359 | 24 | 1.1 | ||
| ProSiteProfiles | 362 | 396 | 35 | 9.602 | ||
| Pfam | 367 | 392 | 26 | 4.50E-04 | ||
| Pfam | 395 | 421 | 27 | 0.0024 | ||
| TIGRFAM | 395 | 425 | 31 | 0.002 | ||
| ProSiteProfiles | 397 | 427 | 31 | 5.678 | ||
| ProSiteProfiles | 428 | 462 | 35 | 7.169 | ||
| ProSiteProfiles | 463 | 493 | 31 | 7.465 | ||
| Pfam | 468 | 492 | 25 | 0.074 | ||
| ProSiteProfiles | 494 | 528 | 35 | 12.299 | ||
| Pfam | 494 | 540 | 47 | 6.50E-12 | ||
| TIGRFAM | 496 | 529 | 34 | 5.90E-07 | ||
| ProSiteProfiles | 529 | 559 | 31 | 8.024 | ||
| ProSiteProfiles | 565 | 595 | 31 | 7.892 | ||
| Pfam | 568 | 592 | 25 | 2.60E-04 | ||
| TIGRFAM | 569 | 592 | 24 | 9.40E-04 | ||
| Gene3D | 625 | 649 | 25 | 5.90E-10 | ||
| ProSiteProfiles | 631 | 665 | 35 | 6.095 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v0911990.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v0911990.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.